Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21150 742 / 0 HAP6 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036600 [exp] 1010 / 0 AT4G21150 806 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022911 [exp] 830 / 0 AT4G21150 868 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Lus10024911 [exp] 446 / 1e-151 AT4G21150 474 / 4e-163 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Lus10024912 [exp] 381 / 8e-128 AT4G21150 360 / 2e-120 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Lus10003546 [exp] 381 / 4e-125 AT4G21150 454 / 6e-154 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Lus10003545 [exp] 246 / 4e-77 AT4G21150 233 / 1e-72 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Lus10033906 [exp] 53 / 1e-08 AT4G21150 57 / 1e-10 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05817 [poplar] [flax] Ribophorin_II Oligosaccharyltransferase subunit Ribophorin II
Representative CDS sequence Show only first row Show all	>Potri.005G226100.1 pacid=42802922 polypeptide=Potri.005G226100.1.p locus=Potri.005G226100 ID=Potri.005G226100.1.v4.1 annot-version=v4.1 ATGGCAAGAAATCTTGGAGGATTTCTGGTTCTGATCGCTGCGGCATTGATCTACTCATCCGCCCTCGCTTCTTATATCTTTCAACCGATCTCCGATTTAC ACCGATCTGCTGCTTTAGAGCTCTTCAATCCTCTCGGTGGATCTTTTCCCAGCGTAGAAGAAACATACGAGGAACTTAGAACGTTTGAGGTTCTTGGAAT TGATAAAAGGTCTGATATCAGCACAGCTGCTTGCCAGTCTGTATCGGAAATCCTTGGGTCGTCTTCTTCTACTTTGAAGGATTTATTCTACGCCTTAAAA GTCAACGGAATATTAAAGTGTGACATCAAAGAGGATGTTTTTGAGGGTGTTGCTTCAAGGCTACAAGCTGCTGTCAGTGGTGCAAGTGCTTTGCTTGATT TCTACTATTCTGTGGGAGGTTTAGCTCTTATCAAGGGTCAAACTACCAAAGATGATCTTTATCTTGCTGATGCTGAAGGAGTTTTTCAGTCCATCAAGGC TCTGAGCCAGAGTGATGGAAGATGGCGCTATAATTCTAATAATCCCGAGTCTAGTACCCTTGCTGCTGGTCTAGCACTTGAAGCACTTGCTGGTATTGTC TCATTATCATCTTCCAAGATAGATCAATCTCTGATCAGAACAACTAAAAATGATATATTGAAGCTGTTTGACAGCATTGAGAAGTATGATGATGGGGCCT TTTACTTTGATGAGAAGCTGGTTGGTGCACATGAACATCAAGGTGCTCTCTCAACTACATCCTCTGTTGTTAGAGGACTGACAGCATTTGCAGCTGTGAC TTCAGGAAGCTTGAATCTTCCAAGTGGCAAAATATTGGGTTTGGCAAAATTTTTCCTCGCCATTGGAATTCCAGGTGATGCCAAAGACTTGTTCAACCAA GTAGATTCCCTGGCTTTCCTAGAGAGCAATACGGTTTCCATTCCACTGATTCTATCGCTTCCGGCTACAGTGCTTTCATTGACTAAGAAGGATGCACTTA AGGTTAAGGTGAATACTGTGCTTGGTTCAAATGCACCTCCGTTGACAGTGAATCTTCTACGAGTTTTCAGATCTGGTTCAAAGGATACTTTGTTAACTGA GAGTCAGGAACTCAAGTTTGACCCTGCAAACGCTGTCTATACCTTGGATGCTTTGCCAAAGAGTGTTGATGTTGGAAAATACACTTTTGTTTTTGAGACG GTGCTTCATGATTCAGACCACAAAAACTTATATGCCACTGGAGGCCAAACTCGGATTCCAATATTTGTGACTGGAATTATCGAAGTTGACACTGCAGAAA TTGCAGTGCTTGATAGTGATCTTGGGAGCATAGAAACCAAGAAGAAGATAGATTTAGCTGGAGATAATACTGTATCATTATCTGCAAACCACCTTCAGAA GCTGCGCCTCTCTTTCCAGTTGTCTACTCCTCTTGGCCATGCATTTAAGCCACATCAGGCAATTCTAAAATTGACGCATGAGACTAAGGTCGAGCATATC TTTTTGATGGGGAGCTCTGGAAAAGAGTTTGAGATTATTCTGGATTTCCTTGGACTAGTTGAGAAATTTTTCTATTTATCAGGGAGATATAATGTTCAAC TCACTGTGGGTGATGCTGTTATGGAGAACTCTTTCTTAAAGGCTGTTGGTCACATTGACCTGGATCTACCCGAAGCACCTGAGAAGGCACCACAGCCTCC AGCACAGCCTCTTGATCCAAACTTGATATATGGTCCTAAAGCAGAGATAGCTCACATCTTCAGGGTTCCTGAAAAGCTTCCACCTAAGGAGCTTTCTCTT ACTTTCTTGGGTCTTACGCTTTTGCCATTTCTTGGATTCTTACTTGGGCTATTGCGTTTAGGGGTGAACTTGAAGAACTTCCCTTCCTCATCTGTTCCCG CCATGTTCGCTGCCCTCTTCCATCTTGGCATAGCAGCAGTTTTGTTGCTCTACGTGCTTTTCTGGCTGAAGTTGGATCTATTCACAACACTGAAAGCACT TGGTTTCTTGGGAGCTTTCCTGATGTTTGTTGGACACAGAATCCTCTCTCACCTGGCCTCATCATCATCCAAGTTGAAATCTGCCTGA
AA sequence Show only first row Show all	>Potri.005G226100.1 pacid=42802922 polypeptide=Potri.005G226100.1.p locus=Potri.005G226100 ID=Potri.005G226100.1.v4.1 annot-version=v4.1 MARNLGGFLVLIAAALIYSSALASYIFQPISDLHRSAALELFNPLGGSFPSVEETYEELRTFEVLGIDKRSDISTAACQSVSEILGSSSSTLKDLFYALK VNGILKCDIKEDVFEGVASRLQAAVSGASALLDFYYSVGGLALIKGQTTKDDLYLADAEGVFQSIKALSQSDGRWRYNSNNPESSTLAAGLALEALAGIV SLSSSKIDQSLIRTTKNDILKLFDSIEKYDDGAFYFDEKLVGAHEHQGALSTTSSVVRGLTAFAAVTSGSLNLPSGKILGLAKFFLAIGIPGDAKDLFNQ VDSLAFLESNTVSIPLILSLPATVLSLTKKDALKVKVNTVLGSNAPPLTVNLLRVFRSGSKDTLLTESQELKFDPANAVYTLDALPKSVDVGKYTFVFET VLHDSDHKNLYATGGQTRIPIFVTGIIEVDTAEIAVLDSDLGSIETKKKIDLAGDNTVSLSANHLQKLRLSFQLSTPLGHAFKPHQAILKLTHETKVEHI FLMGSSGKEFEIILDFLGLVEKFFYLSGRYNVQLTVGDAVMENSFLKAVGHIDLDLPEAPEKAPQPPAQPLDPNLIYGPKAEIAHIFRVPEKLPPKELSL TFLGLTLLPFLGFLLGLLRLGVNLKNFPSSSVPAMFAALFHLGIAAVLLLYVLFWLKLDLFTTLKALGFLGAFLMFVGHRILSHLASSSSKLKSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Potri.005G226100 [exp]	0	1
AT1G16900			Alg9-like mannosyltransferase ...		Potri.011G110800 [exp]	1.41	0.8066
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.003G173900 [exp]	1.41	0.8631
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Potri.005G213100 [exp]	3.00	0.7598	HMT5,SMTA.2
AT1G34130		STT3B	staurosporin and temperature s...		Potri.012G036300 [exp]	3.16	0.7718	Pt-STT3.2
AT3G07140			GPI transamidase component Gpi...		Potri.014G190600 [exp]	9.79	0.7524
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.012G111100 [exp]	10.09	0.7711	CNX1.2
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Potri.005G241100 [exp]	11.53	0.7638
AT1G48430			Dihydroxyacetone kinase (.1)		Potri.012G041100 [exp]	12.00	0.7146
AT1G10840		TIF3H1	translation initiation factor ...		Potri.014G147100 [exp]	13.74	0.7991	TIF3.5
AT2G19385			zinc ion binding (.1)		Potri.006G146200 [exp]	14.86	0.7403

Compare expression of checked genes

Potri.005G226100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.