Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20490 115 / 6e-36 NOP10, EDA27 EMBRYO SAC DEVELOPMENT ARREST 27, nucleolar RNA-binding Nop10p family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036500 [exp] 129 / 2e-41 AT2G20490 116 / 3e-36 EMBRYO SAC DEVELOPMENT ARREST 27, nucleolar RNA-binding Nop10p family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033907 [exp] 117 / 1e-36 AT2G20490 107 / 9e-33 EMBRYO SAC DEVELOPMENT ARREST 27, nucleolar RNA-binding Nop10p family protein (.1.2) Lus10022910 [exp] 118 / 2e-36 AT2G20490 107 / 5e-32 EMBRYO SAC DEVELOPMENT ARREST 27, nucleolar RNA-binding Nop10p family protein (.1.2) Lus10024913 [exp] 116 / 2e-36 AT2G20490 106 / 1e-32 EMBRYO SAC DEVELOPMENT ARREST 27, nucleolar RNA-binding Nop10p family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04135 [poplar] [flax] Nop10p Nucleolar RNA-binding protein, Nop10p family
Representative CDS sequence Show only first row Show all	>Potri.005G226300.2 pacid=42803834 polypeptide=Potri.005G226300.2.p locus=Potri.005G226300 ID=Potri.005G226300.2.v4.1 annot-version=v4.1 ATGTATCTTCAGTTTTATATAAACGATAATGGTGACAAAGTCTACACCACCAAGAAAGAATCACCATTGGGGTTGCCTACTGAATCTGCTCACCCAGCCC GCTTCTCCCCCGATGACAAATACTCAAGGCAAAGATTTCTTTTGAAGAAGCGCTTTGGATTGTTGCCAACCCAACAGTCACCTCTGAAGTACTAA
AA sequence Show only first row Show all	>Potri.005G226300.2 pacid=42803834 polypeptide=Potri.005G226300.2.p locus=Potri.005G226300 ID=Potri.005G226300.2.v4.1 annot-version=v4.1 MYLQFYINDNGDKVYTTKKESPLGLPTESAHPARFSPDDKYSRQRFLLKKRFGLLPTQQSPLKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Potri.005G226300 [exp]	0	1
AT5G41685			Mitochondrial outer membrane t...		Potri.006G077500 [exp]	1.73	0.8254	Pt-TOM7.2
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Potri.002G036500 [exp]	3.46	0.8115
AT3G06040			Ribosomal protein L12/ ATP-dep...		Potri.015G077200 [exp]	4.00	0.8228
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.001G046600 [exp]	4.00	0.8278
AT1G71730			unknown protein		Potri.002G063100 [exp]	4.12	0.8302
AT1G06010			unknown protein		Potri.015G136500 [exp]	5.09	0.7619
AT5G50810		TIM8	translocase inner membrane sub...		Potri.012G103400 [exp]	5.29	0.8105
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.017G059000 [exp]	6.32	0.8161
AT3G49910			Translation protein SH3-like f...		Potri.007G085200 [exp]	6.92	0.8101	Pt-RPL26.2
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.005G196600 [exp]	7.74	0.7753	Pt-RPS18.2

Compare expression of checked genes

Potri.005G226300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.