Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18760 1362 / 0 CHR8 chromatin remodeling 8 (.1) AT5G63950 346 / 2e-101 CHR24 chromatin remodeling 24 (.1) AT2G25170 270 / 3e-74 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT3G06400 265 / 2e-73 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 262 / 2e-72 CHR17 chromatin remodeling factor17 (.1.2) AT2G28290 265 / 3e-72 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G19310 260 / 6e-72 Homeotic gene regulator (.1) AT3G06010 258 / 5e-71 ATCHR12 Homeotic gene regulator (.1) AT3G19210 255 / 6e-71 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT5G66750 251 / 2e-70 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G102800 [exp] 358 / 6e-106 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.005G066600 [exp] 354 / 2e-104 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.008G205600 [exp] 272 / 6e-76 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G021400 [exp] 270 / 2e-75 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.019G129900 [exp] 265 / 3e-75 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 262 / 3e-74 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.010G091200 [exp] 265 / 2e-73 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.018G021100 [exp] 266 / 7e-73 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.006G262200 [exp] 266 / 8e-73 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033909 [exp] 1473 / 0 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10003543 [exp] 1472 / 0 AT2G18760 1543 / 0.0 chromatin remodeling 8 (.1) Lus10037696 [exp] 364 / 8e-108 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10015690 [exp] 359 / 5e-106 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10041735 [exp] 276 / 1e-78 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10041019 [exp] 272 / 6e-75 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10005339 [exp] 272 / 8e-75 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10033967 [exp] 266 / 1e-72 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10034064 [exp] 259 / 2e-71 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10013625 [exp] 261 / 3e-71 AT3G54280 2684 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00176 [poplar] [flax] SNF2_N SNF2 family N-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G226500.11 pacid=42802360 polypeptide=Potri.005G226500.11.p locus=Potri.005G226500 ID=Potri.005G226500.11.v4.1 annot-version=v4.1 ATGAAGGTAGATGAGGATTCAGTTTTGCTTAGTAGCTTGGGGGTCACCTCAGCGAACCCTGAAGATATTGAACGTGTTGTTTTAGAAGAGGCAAGAAACA ATGCAGATAAGGGAGGGAGCACTGAGGAGGAACCTCCTGACAAGTTGGAAAACGTTGATCCATCATCTGCCAACCAAGCAAAACTTTATAGTAAATTGAG GGCTGTAAAATTTGAAATAGATGCTGTTGCATCAACTGTTGAAGAAGTAACAGATGTTGTGAGTGGCGAACACCAGACTTATGATGATGGTGGTGGAACA AAGAAAAGGGACAAAGGAGATGATGAAAGTGGAGTTCAGGTATCTCCTGATGACTTCACTCTTCAACAGGCCCTGGCAGCTGATCGGCTAAGAAGTCTTA AGAGAACTAAAGTAAAACTTGAGAAAGAGCTTTTAGATTTGCGCAAGGATGATGCTACCAAGGCTGTAGAACATGATAAACTGTTAGCAAACCTTGTGAA GGAAGATCCAAGACCGAAGAAAAAGTCAAAAAAGGTTCTGAAATCAGGAAAAAACAAGGAAAAGCAACAGAAAACAGTTTCATTCGCTGATGATGCTGAT TTTGATTTGATGTTGGATGGAGCATCTTCAGGATTTGTTGAAACAGAAAGGGATGAATTGGTGAGGAAAGGAATATTAACTCCTTTTCATCAGCTTAAGG GCTTTGAACGTCGTCTTCAGCAACCAGGGTCATCAAGTGGGAAAAATGAGTCTATTGAAGAAGACAAGACTGATGGTCTTGATTCCGATAGTGTTGTCAG AGCTGCTCATTCGATGTTAGAGGCTGCAAAAGCTCGTCCCACAACTAAACTTCTTGATTCAGAAGCTCTGCCAAAGCTTGATGCACCAACTCGTCCTTTT CAGAGGCTGAAAACACCTTTGAAAGCTTGTCAGTCCCCAGAAAGAGATGCAGAGAAAAGGAAGGGTTCAGAAAGGAAAAGGAAACGGCCTTTGCCTGGAA AGAAATGGAGAAAGAGTGCTTCTTGGGAAGATATGGGTGAAAGTGAAGATTCTGGGAGAAACTTGGTTACATCCATCTCCGAAGAAGACGTTGATGATGG TTATGATAATGACTCTCCTTTCATAACACTTGAAGGTGGTCTTAAAATCCCAGAAGCCATTTTCAGCGAACTCTTTGATTACCAGAAAGTTGGTGTGCAG TGGCTATGGGAATTGCATTGCCAAAGAGCAGGCGGTATTATTGGAGATGAGATGGGTCTTGGTAAGACCATCCAGGTCTTATCTTTTCTTGGAGCATTGC ATTTCAGTAACATGTACAAACCAAGTATTGTTGTTTGCCCTGTCACACTCTTGAGACAATGGAAAAGGGAAGCACAAAAGTGGTACCCAAGATTTCATGT GGAGCTACTACATGATTCTGCTCAGGATGTTTCTTGCAGGGATCCTTTAAAGAAGAAGCGAGCCCAGTCTTATGAAAGCGACTGTGAGACTGAAGATTCA CTTGACAGTGATTATGAGGGAAGTATTTCATGTAGAAAGGCCAACAAATGGGATTCCTTGATAAATAGAGTTTTTGAATCTGATTCTGGGTTGCTTATTA CCACTTATGAACAACTACGCTTGCTAGGAGAAAAATTACTCGACTTTGAATGGGGCTATGCAGTTCTGGATGAAGGGCACCGTATTCGGAATCCAAATGC TGAAATTACCCTGGTTTGCAAACAGCTTCAGACGGTTCATCGCATTATAATGACAGGCGCACCGATTCAAAACAAATTGACTGAATTGTGGTCTTTGTTT GATTTTGTATTTCCTGGAAAGTTGGGGGTCATGCCCGTATTTGAGGCAGAATTTGCTGTTCCAATCTCTGTTGGTGGTTATGCCAATGCTTCACCTCTAC AAGTATCTACAGCTTACAGGTGTGCTGTGGTGCTGCGTGACTTGATCATGCCTTATCTTCTCCGGCGTATGAAGATGGATGTCAATGCACATCTTCCCAA AAAAACTGAACATGTCCTCTTCTGTAGTCTTACTTCAGAGCAAAGATCTGTGTATAGAGCGTTTCTTGCAAGCACTGAGGTGGAAAATATACTGGATGGA AGTAGAAATTCTCTGTATGGAATAGATGTGATGCGTAAGATATGTAACCATCCTGATCTGCTTGAGAGAGAGCATTCCTATCATAATCCAGACTATGGGA ATCCTGAACGCAGTGGAAAAATGAAAGTTGTAGCCCAAGTGCTCAAGGTGTGGCAGGAGCAGGGTCACCGTGTTCTTCTGTTCACTCAAACTCAGCAAAT GCTGGATATTTTTGAGAATTTTTTGAATTCTGGTGGTTATAATTACCGAAGAATGGACGGTTCAACTCCTATAAAACTGAGGATGTCCATAATAGATGAA TTTAACAACTCAGGTGATATTTTTATATTCATTTTAACTACAAAAGTTGGAGGATTAGGGACAAATCTAACTGGTGCAAACAGGGTGATTATCTTTGATC CTGATTGGAACCCCTCAACTGACATGCAGGCCAGGGAACGTGCTTGGCGTATTGGCCAGAAAAAGGATGTCACTGTATATAGACTGATCACAGGTGGAAC TATTGAGGAGAAGGTATATCACCGGCAAATTTATAAGCATTTTCTTACTAATAAGATATTGAAGAACCCACAGCAGAGAAGGTTCTTTAGAGCTCGAGAT ATGAAGGATCTTTTCACGCTGAATGATGATGGAGAGGGTGGGTCAACTGAAACATCTAACATTTTCAGTCAGTTATCTGAAGATGTGAATGTTGTTGGTA CAAAGAAAGAAAAGCTGAAGAAGCGCAAAAAAAACAAAGGCATTGCACAACATGCTGACGATGCCATAGTTGACAATGAAAACAACTCTGAGATCAGAGC TTTGAGGAGGGAAGAGAAAGAAAAAGCTGATTGTAGTGATGGTGAAGTAGATGAAGAAACAAATATCTTGAAGAGTCTTTTTGATGCCAATGGGATACAT AGTGCCGTGAACCATGATGTTATTATGAATGCACATGATGGAGAGAAGATGAGGCTTGAGGAACAAGCTTCTCAAGTTGCACAAAGAGCAGCAGAAGCAT TACGCCAGTCTCGAATGCTCCGTAGTCGTGATAGTATATCTGTCCCTACATGGACAGGCAAATCAGGGACTGCTGGTGCACCATCATCAGTTCGTCAAAA ATTTGGATCAACTGTGAACTCCCAGCTGATCAAATCTTCTGATTCATCATCCAGCAATAAAAAGCAACCTGAAAGGCATAGCAGCTGGGACTTCTGCAGG AAAAGCATTATCCTCGGCGGAACTACTTGCCAGAATTCGGGGAAATCAAGAAAGAGCAGTTGGTGCCGGGCTTGA
AA sequence Show only first row Show all	>Potri.005G226500.11 pacid=42802360 polypeptide=Potri.005G226500.11.p locus=Potri.005G226500 ID=Potri.005G226500.11.v4.1 annot-version=v4.1 MKVDEDSVLLSSLGVTSANPEDIERVVLEEARNNADKGGSTEEEPPDKLENVDPSSANQAKLYSKLRAVKFEIDAVASTVEEVTDVVSGEHQTYDDGGGT KKRDKGDDESGVQVSPDDFTLQQALAADRLRSLKRTKVKLEKELLDLRKDDATKAVEHDKLLANLVKEDPRPKKKSKKVLKSGKNKEKQQKTVSFADDAD FDLMLDGASSGFVETERDELVRKGILTPFHQLKGFERRLQQPGSSSGKNESIEEDKTDGLDSDSVVRAAHSMLEAAKARPTTKLLDSEALPKLDAPTRPF QRLKTPLKACQSPERDAEKRKGSERKRKRPLPGKKWRKSASWEDMGESEDSGRNLVTSISEEDVDDGYDNDSPFITLEGGLKIPEAIFSELFDYQKVGVQ WLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAQKWYPRFHVELLHDSAQDVSCRDPLKKKRAQSYESDCETEDS LDSDYEGSISCRKANKWDSLINRVFESDSGLLITTYEQLRLLGEKLLDFEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLTELWSLF DFVFPGKLGVMPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKMDVNAHLPKKTEHVLFCSLTSEQRSVYRAFLASTEVENILDG SRNSLYGIDVMRKICNHPDLLEREHSYHNPDYGNPERSGKMKVVAQVLKVWQEQGHRVLLFTQTQQMLDIFENFLNSGGYNYRRMDGSTPIKLRMSIIDE FNNSGDIFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQARERAWRIGQKKDVTVYRLITGGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFRARD MKDLFTLNDDGEGGSTETSNIFSQLSEDVNVVGTKKEKLKKRKKNKGIAQHADDAIVDNENNSEIRALRREEKEKADCSDGEVDEETNILKSLFDANGIH SAVNHDVIMNAHDGEKMRLEEQASQVAQRAAEALRQSRMLRSRDSISVPTWTGKSGTAGAPSSVRQKFGSTVNSQLIKSSDSSSSNKKQPERHSSWDFCR KSIILGGTTCQNSGKSRKSSWCRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Potri.005G226500 [exp]	0	1
AT4G03000			RING/U-box superfamily protein...		Potri.010G027900 [exp]	1.73	0.7995
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.003G204700 [exp]	3.16	0.7673
AT1G04300			TRAF-like superfamily protein ...		Potri.008G163300 [exp]	3.74	0.8228
AT5G59900			Pentatricopeptide repeat (PPR)...		Potri.001G236800 [exp]	4.12	0.7533
AT5G51410			LUC7 N_terminus domain-contain...		Potri.003G109000 [exp]	11.22	0.7864
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Potri.003G203100 [exp]	12.04	0.7892
AT5G53440			unknown protein		Potri.012G013800 [exp]	17.08	0.7904
AT3G47850			unknown protein		Potri.012G072600 [exp]	17.83	0.7210
AT2G25730			unknown protein		Potri.006G244900 [exp]	18.65	0.7891
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.001G289800 [exp]	20.44	0.7606

Compare expression of checked genes

Potri.005G226500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.