Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-POP.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03905 435 / 2e-155 ABCI19 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G44110 405 / 1e-143 ABCI21, ATPOP1, ATNAP2, POP1 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATP-binding cassette A21, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G02270 278 / 1e-92 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) AT3G28860 46 / 3e-05 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G10680 45 / 7e-05 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT4G25960 44 / 0.0001 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G59870 43 / 0.0002 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036300 [exp] 530 / 0 AT1G03905 441 / 2e-157 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G086000 [exp] 282 / 2e-94 AT5G02270 511 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.003G155800 [exp] 273 / 1e-90 AT5G02270 503 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.017G081100 [exp] 49 / 3e-06 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.001G139600 [exp] 48 / 6e-06 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.005G073050 [exp] 47 / 8e-06 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.003G094400 [exp] 47 / 9e-06 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.005G073100 [exp] 47 / 2e-05 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G139700 [exp] 46 / 2e-05 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024914 [exp] 422 / 7e-150 AT1G03905 439 / 2e-156 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022909 [exp] 421 / 2e-149 AT1G03905 436 / 1e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023792 [exp] 275 / 3e-91 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10010838 [exp] 274 / 2e-90 AT5G02270 514 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10003971 [exp] 275 / 7e-87 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10041690 [exp] 47 / 1e-05 AT4G39850 1404 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10039320 [exp] 47 / 2e-05 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10024056 [exp] 47 / 2e-05 AT4G39850 1666 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10030674 [exp] 47 / 2e-05 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10027567 [exp] 45 / 6e-05 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.005G226600.1 pacid=42804178 polypeptide=Potri.005G226600.1.p locus=Potri.005G226600 ID=Potri.005G226600.1.v4.1 annot-version=v4.1 ATGGCGGAGAAAGCTTCTCAATCAGAAGGAGGAGGAGGAGAAAATGAGAAGGCAAACAGTATCAGTATATGCGGAATGCAATTCGCATACCCAGGACAGC ATCCACTCTTCTACGAATTCAATCTCAACATCTCTCCTGGATCTCGTTGCCTTCTCGTTGGCGCTAACGGATCTGGGAAGACAACTTTGCTGAAAATAAT GGCAGGGAAGCATATGGTAGGAGGAAGAGATGTGGTGCGAGTGATAAATGGTTCGGCTTTTCATGATACTCAATTGGTTTGTAGTGGTGACTTGGCTTAT TTAGGCGGTTCGTGGAGTAAAACTGTTGGATCTGCAGGGGAGATTCCACTACAGGGAGACTTCTCTGCAGAACATATGATATTTGGAGTGGAAGGGACTG ATCCTGTTAGAAGAGAAAAGTTAATTGAGCTGCTTGACATTGATTTGAAATGGCGTATGCACAAGGTGTCTGATGGGCAGCGGCGACGAGTCCAGATTTG CATGGGTCTTCTTCATCCATTTAAGGTTCTTTTGCTAGATGAAGTTACAGTCGATCTAGATGTTGTTGCCAGGATGGATTTGCTTGAGTTCTTCAAGGAA GAATGTGATCAGAGAGGAGCTACAATTGTATATGCTACTCATATTTTTGATGGGTTAGAGACGTGGGCAACACATCTAGCATACATACAAGATGGTGAGC TGAAGAGGGTTAAGAAGTTAACCGAGGTTCATGAGTTGAAAAACTCAGCCACTCTGCTTTCTGTTGTTGAGTCTTGGCTCCGTTCTGAAACCAAGAATGA GAAAAAGAAACCCACTAACCCTCCTGCCCAAAATCAAAAGACCTCTCCTTTTGGTAGTTCTCCTTTCATGTCTTCTAGACACATGGCATACTACCGCTGA
AA sequence Show only first row Show all	>Potri.005G226600.1 pacid=42804178 polypeptide=Potri.005G226600.1.p locus=Potri.005G226600 ID=Potri.005G226600.1.v4.1 annot-version=v4.1 MAEKASQSEGGGGENEKANSISICGMQFAYPGQHPLFYEFNLNISPGSRCLLVGANGSGKTTLLKIMAGKHMVGGRDVVRVINGSAFHDTQLVCSGDLAY LGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGTDPVRREKLIELLDIDLKWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKE ECDQRGATIVYATHIFDGLETWATHLAYIQDGELKRVKKLTEVHELKNSATLLSVVESWLRSETKNEKKKPTNPPAQNQKTSPFGSSPFMSSRHMAYYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Potri.005G226600 [exp]	0	1	Pt-POP.1
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126800 [exp]	9.32	0.7289
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Potri.008G069800 [exp]	14.66	0.6751
AT5G12470			Protein of unknown function (D...		Potri.001G256300 [exp]	17.88	0.6991
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.010G179400 [exp]	22.58	0.6566
					Potri.014G094600 [exp]	23.45	0.6252
AT5G11190	AP2_ERF	SHN2, SHN3	shine2, Integrase-type DNA-bin...		Potri.018G028000 [exp]	30.39	0.6671
AT3G62650			unknown protein		Potri.014G124900 [exp]	39.94	0.6314
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.016G138700 [exp]	50.19	0.6468
AT3G24110			Calcium-binding EF-hand family...		Potri.017G054902 [exp]	54.00	0.6367
AT3G13410			unknown protein		Potri.003G223601 [exp]	57.06	0.6539

Compare expression of checked genes

Potri.005G226600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.