Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28540 645 / 0 CKL6, PAPK1 casein kinase I-like 6 (.1) AT4G14340 628 / 0 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT1G03930 624 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT3G23340 623 / 0 CKL10 casein kinase I-like 10 (.1) AT5G44100 602 / 0 CKL7 casein kinase I-like 7 (.1) AT5G43320 596 / 0 CKL8 casein kinase I-like 8 (.1) AT1G04440 587 / 0 CKL13 casein kinase like 13 (.1) AT1G72710 536 / 0 CKL2 casein kinase 1-like protein 2 (.1) AT4G26100 535 / 0 CKL1, CK1 casein kinase 1 (.1) AT5G57015 531 / 0 CKL12 casein kinase I-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036000 [exp] 814 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.008G168100 [exp] 676 / 0 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.010G070400 [exp] 676 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 621 / 0 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.001G197600 [exp] 549 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 548 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 542 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 541 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G239900 [exp] 500 / 5e-176 AT4G28880 594 / 0.0 casein kinase I-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033913 [exp] 709 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10024916 [exp] 704 / 0 AT4G14340 640 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10022908 [exp] 675 / 0 AT4G28540 625 / 0.0 casein kinase I-like 6 (.1) Lus10021175 [exp] 650 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10011812 [exp] 640 / 0 AT4G14340 705 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10042570 [exp] 613 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10022029 [exp] 609 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10003539 [exp] 604 / 0 AT4G28540 555 / 0.0 casein kinase I-like 6 (.1) Lus10014661 [exp] 598 / 0 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1) Lus10000553 [exp] 588 / 0 AT3G23340 623 / 0.0 casein kinase I-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G226900.1 pacid=42802315 polypeptide=Potri.005G226900.1.p locus=Potri.005G226900 ID=Potri.005G226900.1.v4.1 annot-version=v4.1 ATGGAAAAATCGAAGATTGACCATATGGTTGGTGGCAAGTTTAAGCTTGGGAGGAAGATTGGCAGTGGATCTTTTGGAGAACTCTTTCTGGGTGTAAATG TGCAAACTGGAGAGGAAGTTGCTGTTAAACTGGAATCTGTAAAGACCAAGCATCCACAGCTTCATTATGAGTCAAAGTTGTATATGCTTCTTCAAGGAGG GACTGGAATTCCCCATCTCAAGTGGTTCGGAGTTGAGGTTGATTACAATGTCATGGTCATTGACCTTCTTGGGCCAAGTTTGGAAGATTTATTCAACTAC TGCAACAGGAAATTCACATTGAAAACAGTGCTGATGCTTGCAGATCAACTAATTAACAGAGTTGAATACATGCATTCAAGAGGTTTCCTTCACCGTGATA TAAAGCCTGACAACTTTTTGATGGGCCTAGGCCGCAAAGCAAATCAGGTTTATGTCATTGATTTTGGTCTTGCAAAGAAGTATAGAGATCTTCAGACCCA CAAGCACATTCCATACAGGGAGAACAAGAACCTTACAGGCACAGCTCGCTATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGACGGGATGAT TTGGAATCCCTTGGTTATGTGCTAATGTATTTCTTAAGGGGCAGTCTTCCATGGCAAGGATTAAAGGCTGGCACAAAGAAGCAAAAATATGATAAGATCA GCGAAAAGAAAGTTTCAACCCCTATTGAGATGCTTTGTAAGTCACACCCCTCTGAATTTGTATCATACTTCCACTACTGCCGGTCACTGCGATTTGAAGA CAAACCAGACTATTCATATTTGAAGAGGCTGTTTCGTGACTTATTTATTCGAGAAGGTTATCAGTTTGACTATGTTTTTGACTGGACTGTTTTGAAGTAC CCTCAGATTGGTGCCAGCTCTAGAGGACGGTATTCTAGTGGGAAACCTGGTCATGCTGGACCATCCGCAGAAAGACCAACCGAAAGGGTCTCAGTTGGAA AAGAGATTCGGGAAAGATTCTCAGGTGCAGTTGAAGCATTTTCAACAAAAAGGGTCACTGGTTCTAGTCTACATGATACTTCTAGAAACAAGACCTTGGA TAATCCACCTGAGCCAGAAAAAGGGCGCAGTTCTTCTCGATATGGAAGCACCTCAAGAAAAGCCATTATCTCAAATAGCAGGCCAAGTTCCTCTGGAGAA CCTTCCGAAGGTCGCTCGGGCCGATTACTCTCTAGTGGTGGCCGTCTGCCTTCGACTCAAAGAGTGCAACCAGGGTATGAGATCAAATCATCCCAGACCC GTGCCGCAGCTGTTAGAGGCACTCGTGAGGACACTTTCCGGAGCTTTGAGTTCCTCTCGCTCAGGAAGTGA
AA sequence Show only first row Show all	>Potri.005G226900.1 pacid=42802315 polypeptide=Potri.005G226900.1.p locus=Potri.005G226900 ID=Potri.005G226900.1.v4.1 annot-version=v4.1 MEKSKIDHMVGGKFKLGRKIGSGSFGELFLGVNVQTGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEVDYNVMVIDLLGPSLEDLFNY CNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDFGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDD LESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKVSTPIEMLCKSHPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKY PQIGASSRGRYSSGKPGHAGPSAERPTERVSVGKEIRERFSGAVEAFSTKRVTGSSLHDTSRNKTLDNPPEPEKGRSSSRYGSTSRKAIISNSRPSSSGE PSEGRSGRLLSSGGRLPSTQRVQPGYEIKSSQTRAAAVRGTREDTFRSFEFLSLRK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Potri.005G226900 [exp]	0	1
AT1G24267			Protein of unknown function (D...		Potri.003G169200 [exp]	1.73	0.7123
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.013G128500 [exp]	6.32	0.6233
AT3G02020		AK3	aspartate kinase 3 (.1)		Potri.002G236800 [exp]	7.93	0.6286
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Potri.015G082500 [exp]	11.61	0.5804
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.012G046300 [exp]	13.49	0.5932
AT2G27285			Coiled-coil domain-containing ...		Potri.009G162500 [exp]	23.32	0.6467
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Potri.012G064500 [exp]	25.21	0.5966
AT2G44680		CKB4	casein kinase II beta subunit...		Potri.002G139900 [exp]	29.88	0.5606	CKB3.2
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075700 [exp]	34.64	0.5662
AT2G37520			Acyl-CoA N-acyltransferase wit...		Potri.006G083600 [exp]	36.81	0.6178

Compare expression of checked genes

Potri.005G226900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.