Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03950 309 / 5e-108 VPS2.3 vacuolar protein sorting-associated protein 2.3 (.1) AT5G44560 278 / 1e-95 VPS2.2 SNF7 family protein (.1.2) AT2G06530 137 / 3e-40 VPS2.1 SNF7 family protein (.1) AT5G22950 82 / 3e-19 VPS24.1 SNF7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G035900 [exp] 358 / 2e-127 AT1G03950 308 / 8e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.001G442500 [exp] 288 / 1e-99 AT5G44560 328 / 3e-115 SNF7 family protein (.1.2) Potri.011G154700 [exp] 286 / 4e-99 AT5G44560 331 / 1e-116 SNF7 family protein (.1.2) Potri.018G065100 [exp] 137 / 4e-40 AT2G06530 332 / 9e-117 SNF7 family protein (.1) Potri.001G170400 [exp] 133 / 7e-39 AT2G06530 326 / 2e-114 SNF7 family protein (.1) Potri.008G034700 [exp] 77 / 5e-17 AT5G22950 337 / 2e-118 SNF7 family protein (.1) Potri.004G215500 [exp] 74 / 3e-16 AT5G22950 332 / 6e-117 SNF7 family protein (.1) Potri.006G144300 [exp] 38 / 0.0006 AT2G06530 62 / 7e-13 SNF7 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033914 [exp] 246 / 3e-83 AT1G03950 278 / 5e-96 vacuolar protein sorting-associated protein 2.3 (.1) Lus10038407 [exp] 242 / 4e-81 AT5G44560 323 / 5e-113 SNF7 family protein (.1.2) Lus10023396 [exp] 199 / 8e-64 AT5G44560 270 / 2e-91 SNF7 family protein (.1.2) Lus10037660 [exp] 136 / 6e-40 AT2G06530 358 / 6e-127 SNF7 family protein (.1) Lus10017166 [exp] 131 / 5e-38 AT2G06530 357 / 2e-126 SNF7 family protein (.1) Lus10015642 [exp] 119 / 7e-33 AT2G06530 338 / 1e-118 SNF7 family protein (.1) Lus10003538 [exp] 86 / 7e-22 AT1G03950 121 / 3e-36 vacuolar protein sorting-associated protein 2.3 (.1) Lus10021423 [exp] 77 / 3e-17 AT5G22950 354 / 2e-125 SNF7 family protein (.1) Lus10016143 [exp] 77 / 3e-17 AT5G22950 357 / 2e-126 SNF7 family protein (.1) Lus10021562 [exp] 62 / 5e-13 AT2G06530 134 / 3e-41 SNF7 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [poplar] [flax] PspA PF03357 [poplar] [flax] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Potri.005G227000.3 pacid=42803641 polypeptide=Potri.005G227000.3.p locus=Potri.005G227000 ID=Potri.005G227000.3.v4.1 annot-version=v4.1 ATGAACCTCTTCAGCAAAAAACCAAGCCCTAAAGAGGCTCTTCGAGATAGTAAGAGAGAAATGCAACATGCTACTAGAGGTATAGAGAGGGAAATCGGAG CATTGCAGCTAGAAGAAAAGAAGCTTGTTGCGGAGATAAAACGGACAGCTAAGACTGGAAACGATGCAGCAACTAAAATTTTAGCCCGGCAGCTAATCAG GCTCAGGCAGCAAATAGCTAACTTACAAGGCAGTCGAGCTCAAATGAGAGGCATAGCGACCCATACTCAGGCAATGCATGCTCAGTCTTCAGTTGCTGTT GGTTTAAAAGGTGCCAGTAAGGCAATGGAAGCTATGAATAAGCAAATGGCGCCTGCAAAGCAAATGAAGGTTATAAGAGAGTTTCAGAAGCAGTCAGCAC AAATGGATATGACTACTGAAATGATGTCGGATGCCATAGACGATGCCTTGGATAACGATGAGGCTGAAGAGGAGACTGAAGAGCTGACGAATCAGGTGCT GGATGAAATTGGTGTTGATGTTGCCTCACAGTTGTCAGTGGCACCAAAGGGTAAAATCACAGGGAAGAATAGAGAGGATGCCAGCAGTTCTGGCATTGAC GAGCTAGAGAAACGTTTGGCAGCCATGAGAAACCCTTGA
AA sequence Show only first row Show all	>Potri.005G227000.3 pacid=42803641 polypeptide=Potri.005G227000.3.p locus=Potri.005G227000 ID=Potri.005G227000.3.v4.1 annot-version=v4.1 MNLFSKKPSPKEALRDSKREMQHATRGIEREIGALQLEEKKLVAEIKRTAKTGNDAATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAQSSVAV GLKGASKAMEAMNKQMAPAKQMKVIREFQKQSAQMDMTTEMMSDAIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSVAPKGKITGKNREDASSSGID ELEKRLAAMRNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03950		VPS2.3	vacuolar protein sorting-assoc...		Potri.005G227000 [exp]	0	1
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.012G090100 [exp]	2.23	0.7155
AT1G27330			Ribosome associated membrane p...		Potri.001G057300 [exp]	42.21	0.6555
					Potri.001G248704 [exp]	43.89	0.6461
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Potri.008G106900 [exp]	77.21	0.6603
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Potri.001G296800 [exp]	78.00	0.6493
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.001G459700 [exp]	90.33	0.5989	MUR4.1
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Potri.009G020900 [exp]	164.48	0.6129
AT5G65000			Nucleotide-sugar transporter f...		Potri.005G075600 [exp]	255.47	0.6001

Compare expression of checked genes

Potri.005G227000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.