Plant FIBer expression Database

Potri.005G227300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27090 234 / 4e-81 Ribosomal protein L14 (.1)
AT2G20450 231 / 6e-80 Ribosomal protein L14 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G035700
[exp]
262 / 5e-92 AT4G27090 234 / 8e-81 Ribosomal protein L14 (.1)
Potri.008G168600
[exp]
249 / 8e-87 AT4G27090 230 / 2e-79 Ribosomal protein L14 (.1)
Potri.010G069900
[exp]
246 / 7e-86 AT4G27090 228 / 2e-78 Ribosomal protein L14 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008246
[exp]
238 / 3e-82 AT2G20450 228 / 8e-79 Ribosomal protein L14 (.1)
Lus10024918
[exp]
236 / 1e-81 AT2G20450 224 / 3e-77 Ribosomal protein L14 (.1)
Lus10011807
[exp]
231 / 9e-80 AT2G20450 221 / 9e-76 Ribosomal protein L14 (.1)
Lus10021170
[exp]
228 / 1e-78 AT2G20450 218 / 1e-74 Ribosomal protein L14 (.1)
Lus10003627
[exp]
149 / 7e-48 AT4G27090 139 / 2e-44 Ribosomal protein L14 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0107 KOW PF01929 Ribosomal_L14e Ribosomal protein L14
Representative CDS sequence
>Potri.005G227300.1 pacid=42804397 polypeptide=Potri.005G227300.1.p locus=Potri.005G227300 ID=Potri.005G227300.1.v4.1 annot-version=v4.1
ATGCCGTTCAAGAGGTACGTGGAGATTGGGAGAGTGGCTCTTGTCAACTACGGCAAGGATTACGGCAAGCTCGTTGTTATAGTCGATGTCATCGATCAAA
ACAGAGCTCTGGTAGATGCTCCAGATATGGTTAGGAGTCAAATGAACTTCAAGAGGCTTTCACTCACTGATATCAAGATTGAGATCAACAGGGTTCCCAA
GAAGAAGGCACTAATTGAAGCCATGGAGAAGGCTGATGTGAAGAACAAGTGGGAGAACAGTTCATGGGGCAGGAGACTCACTGTGCAGAAGAGAAGGGCA
TCACTTAATGATTTTGATAGGTTCAAGCTCATGTTGGCGAAGATCAAGAAGGCAGGAATTGTCAGGCAGGAGCTTGCAAAACTCAAAAAGGAGACAGCCT
AA
AA sequence
>Potri.005G227300.1 pacid=42804397 polypeptide=Potri.005G227300.1.p locus=Potri.005G227300 ID=Potri.005G227300.1.v4.1 annot-version=v4.1
MPFKRYVEIGRVALVNYGKDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKIEINRVPKKKALIEAMEKADVKNKWENSSWGRRLTVQKRRA
SLNDFDRFKLMLAKIKKAGIVRQELAKLKKETA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27090 Ribosomal protein L14 (.1) Potri.005G227300
[exp]
0 1
AT2G17360 Ribosomal protein S4 (RPS4A) f... Potri.013G011000
[exp]
2.00 0.9144
AT4G27090 Ribosomal protein L14 (.1) Potri.002G035700
[exp]
3.16 0.9161
AT2G47110 UBQ6 ubiquitin 6 (.1.2) Potri.014G115100
[exp]
8.94 0.8978 Pt-UBI.3
AT5G23740 RPS11-BETA ribosomal protein S11-beta (.1... Potri.014G053300
[exp]
10.09 0.9054 RPS11.4
AT3G05560 Ribosomal L22e protein family ... Potri.002G204100
[exp]
12.12 0.8861 RPL22.4
AT3G13580 Ribosomal protein L30/L7 famil... Potri.018G140300
[exp]
13.03 0.8950
AT2G39990 AteIF3f, EIF2 Arabidopsis thaliana eukaryoti... Potri.010G192000
[exp]
15.49 0.8563 Pt-TIF3.4
AT3G62870 Ribosomal protein L7Ae/L30e/S1... Potri.004G113800
[exp]
16.24 0.8848 RPL7.5
AT3G62870 Ribosomal protein L7Ae/L30e/S1... Potri.017G100800
[exp]
17.74 0.8837
AT3G10950 Zinc-binding ribosomal protein... Potri.002G140100
[exp]
18.16 0.8509

Potri.005G227300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.