Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28550 617 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 610 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G27100 504 / 5e-178 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 486 / 5e-171 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G59570 189 / 4e-53 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G43490 172 / 3e-47 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT5G52580 154 / 5e-41 RabGAP/TBC domain-containing protein (.1.2) AT5G41940 125 / 3e-31 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 120 / 1e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G49350 119 / 4e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G135300 [exp] 504 / 6e-178 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.001G419100 [exp] 497 / 3e-175 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.017G023200 [exp] 198 / 1e-56 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.007G132900 [exp] 196 / 9e-56 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.006G066300 [exp] 146 / 4e-38 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.018G127500 [exp] 144 / 3e-37 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.015G007400 [exp] 125 / 2e-31 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 122 / 4e-30 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.003G146300 [exp] 115 / 9e-28 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022905 [exp] 651 / 0 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10024920 [exp] 648 / 0 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10011159 [exp] 493 / 3e-173 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10043064 [exp] 369 / 5e-124 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10004802 [exp] 181 / 2e-51 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10006646 [exp] 153 / 2e-40 AT5G52580 939 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10038091 [exp] 149 / 3e-39 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 149 / 3e-39 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10027697 [exp] 141 / 2e-38 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10008872 [exp] 124 / 8e-31 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.005G227400.2 pacid=42805493 polypeptide=Potri.005G227400.2.p locus=Potri.005G227400 ID=Potri.005G227400.2.v4.1 annot-version=v4.1 ATGGTTGGTTGTGGGGGATTGACAGAGATTGTTGATATTATGAAGAGAACAGGAGCTGAGGACTTGGGGGATTTCTATCCAATCCGACCTGATTGCCAAG CGGATACTCCAAAGCCCCGTTTCAAGCCCAGGGCTGGGAAAACTCTTAGTGAAAGAAGGTGGAATGCTGCGTTCTCTGAAGATGGTCATTTGGATATTGA GAAGGTGCTTAGACGGATCCAACGGGGGGGTGTTCATCCTGCAATTAAAGGGTCGGTATGGGAATTTGTGTTAGGATGCTTTGATCCTAATAGCACATAT GAAGAACGGAATCAGCTCAGGCAAAGTAGGAGGGAGCAGTACATCAGGTGGAAAGCTGAGTGTCAACACATGGTTCCAGTTATTGGTAGCGGAAAGCTTA TCACAACTCCCATTATTACTGATGTTGGGCAACCAGTAATTGATTCTGTAATAAATAGTTCTTTTTCAGACAAGAGATCAATTCAATGGATGCTTGCTTT GCATCAAATTGGTTTGGATGTTGTTCGCACAGATCGAGCTCTTGCTTTTTATGAGAGTGAAAAAAATCTGGCAAAACTTTGGGATATTCTTGCCGTTTAT GCTTGGGTGGATAATGATATTAGTTATGTCCAAGGAATGAATGATATTTGCTCTCCAATGGTAATTCTTCTTGAAAATGAAGCAGATGCCTTTTGGTGTT TTGAGCGTGCAATGCGGAGACTGAGAGAAAACTTCAGGTGCAGTGCAAGTTCGATGGGGGTGCAGACTCAGCTGAGTACGCTTTCACAAGTAATTAAAAC TGTTGATCCGAAGCTTCATCAACACCTTGAGGATCTAGATGGTGGTGAATATTTATTTGCATTTCGCATGTTGATGGTACTCTTTAGAAGAGAGTTCTCC TTTGTGGATTCTCTGTATCTTTGGGAGTTGATGTGGGCCATGGAGTACAATCCAAACATCTTCTCTTTATATGAGAAGCCTATTGCCGAGTCAGACAAGA GTGCTGCATCTATGTTGAATAATAAGCTGCTAAAGCAGTGTGGCAAGTTTGAGAGAAATAAAGTGAAGACTGGATGTAAGGACCAACAGAGTGCACTTGC TGTTTTTCTTGTTGCCAGTGTTCTTGAGGCCAAGAACAAGAGAATTCTAAAGGAGGCTAAGGGTCTTGATGATGTCGTCCAGATATTGAGCGATATTACT GGAAATATGGATGCTAGAAAGGTATGTAAAGAGGCATTGAAGATTCATAAAAAGTATCTGAGCAAGGCCAAAAAGTGA
AA sequence Show only first row Show all	>Potri.005G227400.2 pacid=42805493 polypeptide=Potri.005G227400.2.p locus=Potri.005G227400 ID=Potri.005G227400.2.v4.1 annot-version=v4.1 MVGCGGLTEIVDIMKRTGAEDLGDFYPIRPDCQADTPKPRFKPRAGKTLSERRWNAAFSEDGHLDIEKVLRRIQRGGVHPAIKGSVWEFVLGCFDPNSTY EERNQLRQSRREQYIRWKAECQHMVPVIGSGKLITTPIITDVGQPVIDSVINSSFSDKRSIQWMLALHQIGLDVVRTDRALAFYESEKNLAKLWDILAVY AWVDNDISYVQGMNDICSPMVILLENEADAFWCFERAMRRLRENFRCSASSMGVQTQLSTLSQVIKTVDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFS FVDSLYLWELMWAMEYNPNIFSLYEKPIAESDKSAASMLNNKLLKQCGKFERNKVKTGCKDQQSALAVFLVASVLEAKNKRILKEAKGLDDVVQILSDIT GNMDARKVCKEALKIHKKYLSKAKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Potri.005G227400 [exp]	0	1
AT1G12000			Phosphofructokinase family pro...		Potri.011G015900 [exp]	3.16	0.9489
AT1G12000			Phosphofructokinase family pro...		Potri.006G281900 [exp]	5.29	0.9459
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.001G087800 [exp]	6.24	0.9135
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.017G029000 [exp]	6.92	0.9300
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.001G157700 [exp]	9.53	0.9242
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.008G100000 [exp]	12.48	0.9301	ARF1.3
					Potri.003G175500 [exp]	13.52	0.8834
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.002G165800 [exp]	13.56	0.8899
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.010G013500 [exp]	14.07	0.9259
AT2G35120			Single hybrid motif superfamil...		Potri.015G122500 [exp]	16.97	0.9196

Compare expression of checked genes

Potri.005G227400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.