Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28560 444 / 1e-153 RIC7 ROP-interactive CRIB motif-containing protein 7 (.1) AT1G13230 178 / 9e-51 Leucine-rich repeat (LRR) family protein (.1) AT3G25670 170 / 3e-47 Leucine-rich repeat (LRR) family protein (.1) AT1G68780 163 / 4e-45 RNI-like superfamily protein (.1) AT1G80080 163 / 1e-44 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT2G42800 159 / 3e-43 AtRLP29 receptor like protein 29 (.1) AT5G48940 131 / 2e-32 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G35710 126 / 1e-30 Protein kinase family protein with leucine-rich repeat domain (.1) AT2G25790 122 / 2e-29 Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 122 / 2e-29 ERL1 ERECTA-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114700 [exp] 163 / 1e-44 AT1G68780 387 / 2e-131 RNI-like superfamily protein (.1) Potri.008G211800 [exp] 148 / 1e-39 AT2G42800 474 / 7e-166 receptor like protein 29 (.1) Potri.001G202100 [exp] 146 / 2e-38 AT1G80080 597 / 0.0 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Potri.002G008450 [exp] 129 / 8e-32 AT4G08850 462 / 9e-150 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.017G151400 [exp] 128 / 3e-31 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G008375 [exp] 128 / 3e-31 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.010G183400 [exp] 127 / 3e-31 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G014232 [exp] 127 / 4e-31 AT1G53440 504 / 5e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G040200 [exp] 126 / 9e-31 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003624 [exp] 481 / 1e-167 AT4G28560 441 / 2e-152 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10008242 [exp] 434 / 1e-149 AT4G28560 395 / 8e-135 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10042458 [exp] 183 / 4e-53 AT1G80080 467 / 3e-163 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10031383 [exp] 186 / 3e-52 AT2G42800 446 / 1e-152 receptor like protein 29 (.1) Lus10010946 [exp] 181 / 1e-51 AT2G42800 459 / 2e-159 receptor like protein 29 (.1) Lus10026208 [exp] 176 / 9e-50 AT1G80080 500 / 2e-175 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10034261 [exp] 162 / 6e-45 AT1G13230 460 / 6e-161 Leucine-rich repeat (LRR) family protein (.1) Lus10038948 [exp] 159 / 1e-43 AT1G68780 404 / 2e-138 RNI-like superfamily protein (.1) Lus10034384 [exp] 155 / 2e-42 AT1G13230 455 / 5e-159 Leucine-rich repeat (LRR) family protein (.1) Lus10027239 [exp] 138 / 5e-36 AT3G25670 402 / 6e-138 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G227600.1 pacid=42802310 polypeptide=Potri.005G227600.1.p locus=Potri.005G227600 ID=Potri.005G227600.1.v4.1 annot-version=v4.1 ATGGCTATATCCTCTTCCTTTCCCATCTTCGGTCTTCTCTTCCTTACAACTCTCATGTCCTCTCTTGTCATTTCACACCAACAACCTCTCCTCGACTCGG CCGAGCAGGACTCCCTCTTTCAGGTCCTTTACTCCATCAACTCAGCCATCCCTTGGCGCACTCTCTTCCCTGACGACCTCTGCCTCTCCGCCCCACACGG CATCGTTTGCGAGTACTTCACCGAAGAACAACCACCACTCACCCCAAACGGTTCCGTTTCAACCCAGCCTCCTCTCGAAACGGCTCACATTTCTGAACTC AGTTTCGGGTTCGTCTCTGACTACACATCCAACCCACCTTGCTCTCCAAATTCCACCATTAACCCTCTTGTCTTCACTTCTTTTAAGTTCCTACGCAAGC TGTTCTTTTACAAGTGTTTCACCGAGATGCCAGTTTCGGTGCCTGATGTTTCTTCTTCGAGCTTTGGGGCTAACCTTGAAGAGCTTGTGTTTATTGAGAA CCCAGCTCTGGTTGGGTCTCTAAGTGGCATCATTGGTAATTTTACTAATTTAAGGAGGCTAGTTTTGACTGGAAATGGTATTTATGGCAATATTCCAGAT GGGGTTGGTTCTTTGGTTAACATGGAAGAGGTTACAGTGTCAAGAAACCAGTTAAGCGGAGGGGTTCCTTTCAGTCTAGCTAAGTTGAAAAAATTGAGAG TTCTTGATTTGAGTCAAAATTATCTTGACGGTTATGTCCCTTTGTCTGTGGGTAATTTATCTCGGCTTTTGAAGCTTGATTTGAGTCATAATCGGCTTTC TGGTAAAATCCCAGAGAGCTTGGTTAGTTTACAGAGTCTGGAGTTCTTAGACCTGAGTTTTAACAGCTTCGGTAACTATGGAGTGCCTTTGTTTTTAGGC GAAATGCCCAGGTTGAAGGAAGTGTATTTGAGTGGAAATTTGCTAGGAGGGCATATACCGGAAATATGGGAGAAACTTGGGGGTATTTCGGGAATAGGAT TTTCTGACATGGGTTTGGTTGGGAATATTCCAGCTTCTATGGGGGTACATTTGAGGAACCTGTGTTACTTAGGGCTTGATAACAACAAGCTTGAAGGGAC TGTGCCTGAAGAGTTGGGGTTCTTGAAATGTGGTTATGAGATCAATTTGGAGAACAACAATTTGAGTGGTAAAATCCCAGTTACTTTTACTTCCAAGGTT GCTGAAAAGCTGAAGCTGAAGGGCAACTCAGGGCTGTGTGTTGATGGTGGTGATTTTTCAGGGTTTGGTAAATTTGAGGGCAGTTTAGGGAAACTGAAGC TGTGCAACAAATCAGATATTTCCAGTCCTGTACTCGTCCAAGAGGGTTCTCTTGATTCCTCATCATCATCTCAAACACAGATTTCATCTCGGATGATGCT TGGATTTGGATTTCTGTTCTTTTTATCCTGTTAA
AA sequence Show only first row Show all	>Potri.005G227600.1 pacid=42802310 polypeptide=Potri.005G227600.1.p locus=Potri.005G227600 ID=Potri.005G227600.1.v4.1 annot-version=v4.1 MAISSSFPIFGLLFLTTLMSSLVISHQQPLLDSAEQDSLFQVLYSINSAIPWRTLFPDDLCLSAPHGIVCEYFTEEQPPLTPNGSVSTQPPLETAHISEL SFGFVSDYTSNPPCSPNSTINPLVFTSFKFLRKLFFYKCFTEMPVSVPDVSSSSFGANLEELVFIENPALVGSLSGIIGNFTNLRRLVLTGNGIYGNIPD GVGSLVNMEEVTVSRNQLSGGVPFSLAKLKKLRVLDLSQNYLDGYVPLSVGNLSRLLKLDLSHNRLSGKIPESLVSLQSLEFLDLSFNSFGNYGVPLFLG EMPRLKEVYLSGNLLGGHIPEIWEKLGGISGIGFSDMGLVGNIPASMGVHLRNLCYLGLDNNKLEGTVPEELGFLKCGYEINLENNNLSGKIPVTFTSKV AEKLKLKGNSGLCVDGGDFSGFGKFEGSLGKLKLCNKSDISSPVLVQEGSLDSSSSSQTQISSRMMLGFGFLFFLSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Potri.005G227600 [exp]	0	1
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Potri.001G398800 [exp]	4.69	0.7557
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.001G313000 [exp]	8.66	0.7534
AT5G18600			Thioredoxin superfamily protei...		Potri.010G021800 [exp]	10.95	0.7117
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Potri.003G156900 [exp]	11.40	0.7238
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100700 [exp]	12.36	0.7242
AT1G49230			RING/U-box superfamily protein...		Potri.001G309600 [exp]	12.64	0.7015
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G074500 [exp]	15.09	0.7389
					Potri.010G200301 [exp]	15.29	0.6952
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100800 [exp]	17.49	0.6977
AT1G11380			PLAC8 family protein (.1)		Potri.004G026700 [exp]	18.49	0.7306

Compare expression of checked genes

Potri.005G227600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.