Plant FIBer expression Database

Potri.005G227700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75230 386 / 2e-132 DNA glycosylase superfamily protein (.1.2)
AT1G19480 384 / 4e-132 DNA glycosylase superfamily protein (.1.2)
AT3G50880 273 / 4e-90 DNA glycosylase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G035300
[exp]
476 / 3e-168 AT1G19480 360 / 8e-123 DNA glycosylase superfamily protein (.1.2)
Potri.007G024200
[exp]
275 / 2e-90 AT3G50880 293 / 1e-99 DNA glycosylase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033215
[exp]
411 / 4e-142 AT1G75230 416 / 3e-144 DNA glycosylase superfamily protein (.1.2)
Lus10010824
[exp]
406 / 2e-140 AT1G19480 417 / 2e-145 DNA glycosylase superfamily protein (.1.2)
Lus10041749
[exp]
271 / 1e-88 AT3G50880 308 / 3e-105 DNA glycosylase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0198 HHH PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence
>Potri.005G227700.3 pacid=42804484 polypeptide=Potri.005G227700.3.p locus=Potri.005G227700 ID=Potri.005G227700.3.v4.1 annot-version=v4.1
ATGGGCGAACAAACCAAAATCCAACCTCAATCACAACCAGTCCAATCAGAATCCCAGGCTCTCCCCCAAATCGAAGCCCAGGTCCAAACTCAATCACTGT
CTCAGCCATTCAATACCCCCACCACCACCACCTCGGAATTAACCACTGTTCCACCACCAATCACATCTCCTCCCGCCAAAATCCCTTCCCGTCCTCGTAA
AATCCGTAAAGTCTCACCCAATGCTGCTGCCACCACCGCTAACGACCCTAATTCTTCCCCAACCTCCACCACTACCACAACTGAAACACCCAAAAGCCCT
GCCATCAAAACCCCAAGAACAAAAACGTCCCAACAGCTAGTAATCGCCACTCCGCGGATCGTGGCAAGATCTCTAACATGTGAAGGTGAGCTTGAATACG
CAATTCACTATCTCCGTAACGCCGATCCACTCCTTGCTTCCTTAATTGACATCTACCAGCCTCCTAGCTTTGATACGTTCCCCACTCCTTTCCTTGCTCT
CGCTCGCAGCATTCTTTACCAGCAACTTGCTTTTAAAGCAGGGTCTTCAATTTACACGCGCTTTATTTCGCTTTGTGGTGGAGAGGCTGGAGTTTTACCC
GAAACAGTTCTTGCTTTGACTCCACAACAGTTGAGGCAATTTGGGGTTTCTGGGCGTAAAGCGAGTTACCTTCATGATCTAGCTAGAAAGTATCGAAATG
GTATTTTATCGGATTCTGCGATTGTAAATATGGATGATAGATCGCTTTTTACAATGCTTACTATGGTAAATGGGATTGGTTCATGGTCAGTGCATATGTT
CATGATTTTCTCGCTGCATAGACCGGATGTGCTGCCAATTAATGATCTTCAAGTGAGGAAAGGGGTGCAGTTGCTTTATAATTTGCCGGAGTTGCCACGC
CCATCACAGATGGATCAGTTGTGTGAAAAATGGAGGCCGTATAGGTCGGTTGCGTCATGGTATCTTTGGAGATTACAAGAGTCAAAAGGGTCACCTTCCA
GTGTGATAGCAGTGTCTACTAGTGGTAATTTGACACAGCAACAGCAGGAAGACCAGCAGCAGCCTCAGCTTATTGACCCAATAAACAGCATTCTCAATCT
TGGGTATGTCCACGTTCAGTTTTGTTGCATGGCAAATTTGATTCATCTAACTTTCATGTTCTGCGTTGCTATTAGTTGTTCCCGTGCTTCTCTTCTCTTC
TTTCTCGATGTGTTGTTTATTTTACCCAGTTGA
AA sequence
>Potri.005G227700.3 pacid=42804484 polypeptide=Potri.005G227700.3.p locus=Potri.005G227700 ID=Potri.005G227700.3.v4.1 annot-version=v4.1
MGEQTKIQPQSQPVQSESQALPQIEAQVQTQSLSQPFNTPTTTTSELTTVPPPITSPPAKIPSRPRKIRKVSPNAAATTANDPNSSPTSTTTTTETPKSP
AIKTPRTKTSQQLVIATPRIVARSLTCEGELEYAIHYLRNADPLLASLIDIYQPPSFDTFPTPFLALARSILYQQLAFKAGSSIYTRFISLCGGEAGVLP
ETVLALTPQQLRQFGVSGRKASYLHDLARKYRNGILSDSAIVNMDDRSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLQVRKGVQLLYNLPELPR
PSQMDQLCEKWRPYRSVASWYLWRLQESKGSPSSVIAVSTSGNLTQQQQEDQQQPQLIDPINSILNLGYVHVQFCCMANLIHLTFMFCVAISCSRASLLF
FLDVLFILPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G75230 DNA glycosylase superfamily pr... Potri.005G227700
[exp]
0 1
AT4G35800 RNA_POL_II_LSRN... RNA polymerase II large subuni... Potri.005G107600
[exp]
3.16 0.9227 Pt-RPB1.1
AT3G13300 VCS VARICOSE, Transducin/WD40 repe... Potri.001G469500
[exp]
5.29 0.8992 Pt-VCS.1
AT1G14650 SWAP (Suppressor-of-White-APri... Potri.005G094600
[exp]
7.21 0.8838
AT1G19480 DNA glycosylase superfamily pr... Potri.002G035300
[exp]
7.93 0.8880
AT1G27750 nucleic acid binding (.1) Potri.014G017000
[exp]
12.12 0.8902
AT5G65180 ENTH/VHS family protein (.1.2) Potri.007G086700
[exp]
14.14 0.8727
AT1G21700 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3... Potri.002G080600
[exp]
15.09 0.8840
AT5G18440 AtNUFIP nuclear FMRP-interacting prote... Potri.008G012250
[exp]
15.19 0.8871
AT2G32630 Pentatricopeptide repeat (PPR-... Potri.003G008900
[exp]
15.49 0.8887
AT2G27110 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.... Potri.004G196300
[exp]
19.18 0.8699

Potri.005G227700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.