Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085701 [exp] 246 / 2e-69 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.003G210701 [exp] 245 / 3e-69 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.003G210600 [exp] 245 / 5e-69 AT1G20480 91 / 4e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.010G230200 [exp] 67 / 2e-11 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.012G095000 [exp] 60 / 4e-09 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 59 / 5e-09 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.008G031500 [exp] 59 / 1e-08 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.003G188500 [exp] 51 / 3e-06 AT3G21240 741 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.017G033600 [exp] 45 / 0.0002 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002535 [exp] 689 / 0 AT1G20510 79 / 3e-15 OPC-8:0 CoA ligase1 (.1.2) Lus10007144 [exp] 268 / 4e-85 ND 47 / 7e-06 Lus10007143 [exp] 201 / 4e-61 ND / Lus10027377 [exp] 214 / 2e-58 AT4G05160 95 / 2e-19 AMP-dependent synthetase and ligase family protein (.1) Lus10002549 [exp] 185 / 8e-49 AT4G05160 74 / 5e-13 AMP-dependent synthetase and ligase family protein (.1) Lus10037934 [exp] 50 / 4e-06 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Potri.005G227800.3 pacid=42803107 polypeptide=Potri.005G227800.3.p locus=Potri.005G227800 ID=Potri.005G227800.3.v4.1 annot-version=v4.1 ATGAACTACGAGAATTATGACCCTTCTTTCCCTGATCAACCTGTGGTCGATCTCTACCTCCCAGTATGGGCTAACCTACCATCCTTTCGGTCCAAGCCAG CCTTCATTTGGGCTGAAGACGGCTCAAATGGTGCAACCAAGAATTCAACCATCACTTATGCTCAGCTCAATGAATCAGTTCACTCAATTTCTACCCAGTT ACTGACTCAATTACAAAGAGGTGACACTGTCGTGATTTTATGCTCACCTGGGTTAGAGCTTGTTGAGATCATCTTTGGGTGCCAAAGAGCTGGCCTTTTG TGCATCCCTGTGTTCCCACCAGACTCTTCTTTCACTAAAGAAAACTATCACCATCTTGTTAGAGTTCTGTCCCAGACAAAGCCCAAAGCTGCCATAGCGC ACCATGATTACATTGCCAGAGTTCAACACTACATCTCCTTGTCCTCTGACAATCATAAGCTTGCCGAGATGTTGCAAAAGCTCACCTGGATCTCTACTTC TGATATCAAAGACAAGAAAGTGAGTTCAAATATGGGCTCATTGCCTTATAATGGCTGTAGACCAAATGAAATGTACTTAATCCAATACACTTCAGGTGCT ACAGGGATTCCAAAACCTGTGCTGGTAACAGCAGGAGCAGCTGCTCACAATGTGAGAGTAGCCAGGAAAGCCTACGATCTCTATCCAAACAGTGTTATTG TCTCTTGGTTGCCTCAGTACCATGACTGTGGCCTGCAGTTTTTGTTATTGACTATCATATCTGGTGCAACAAGTGTGCTAACATCACCTGGCGCCTTTGT GAACCGGCCTGGGCTATGGCTTGAGCTGATTTCAAAGTTCCAAGCTACTTGCACTCCAGTTCCATCATTCTCAATACCACTTGTTATAAAGCGTGGTGGG GTTGATAAAGGAACTCAGCCTATAAGTTTATGGAGTTTGAAAAACTTAATCATCATCAATGAGCCTATTTACAAAGCATCGGTTGACAGGTTCGTCGAAA TGTTTAAGCCTTTTGGGCTAAACCCATCATGCATTTCTCCATCTTATGGCTTGGCAGAAAACGGCACCTTTGTTTCAACAGCATGGAGAGGCAACTGCAG CAATGCTGCTAGCTTTCGACACATCCCGTCACACAACAAGCTCTTGCCATGTGCAAGGCTTGCTTCTCAACGTGAAGAAGAAGAGGACATGGACATTATA GTTGTAGACGAAGAAACTTGTGAGCTTGTTGTGGATGGAACGGAAGGTGAGATTTGGGTCTCATCTCCAAGCAACTGCTCAGGTTACCTTGGCCACCCAT CTTTAACTCGAGAGATATTTCAAGCAAGACCAAGGAACAAGGTGAGCCGGTGCTTTGTCCGCACAGGCGATAGAGGAATCATCAAGGAGAAGAAAGATGT TATCAAACTCCCAAACAATCAAGAAATACACCCTCATTTTATAGAGACAGCTGCTCAGAATAGTTGTCAAAAGTTTCTCAGAGGAGGTTGCCTCGCTGCA TTTGAGATGTCAAGCACTATAGTTCTTGTTGCAGAGATTCAAAGACACGAAAAGGATGTTAAGGTATTGAAACGAATCTGTGAGTGGGCAAAGCAAGCTG TTCTGAAGGAAGAGAAAGTTGAAATTGGCTTGATGGTTCTAGTTAAGAGTGGATGTGTTCCGAAAACAACTTCAGGGAAGATTCAAAGATGGGCTGCCAA AGATATGCTGATTAGAGGCAAAATGAGCGTGGTAATGGAGATGCAGTTCGAGGATAACAATGAAAGATTCTTGCCATCGTACGAGGCAATAGGTAAAGCA AATAAAGAGATCAGATGTCAAGGGGGAAACAGAACAAGTACTGTTGCTGAAGATAGAGATCAAGAAATCTCCCTAGCATTTTCAAGCACTCCAAGGCGTC CCCCAATGCTTTCTCTTCTGTGA
AA sequence Show only first row Show all	>Potri.005G227800.3 pacid=42803107 polypeptide=Potri.005G227800.3.p locus=Potri.005G227800 ID=Potri.005G227800.3.v4.1 annot-version=v4.1 MNYENYDPSFPDQPVVDLYLPVWANLPSFRSKPAFIWAEDGSNGATKNSTITYAQLNESVHSISTQLLTQLQRGDTVVILCSPGLELVEIIFGCQRAGLL CIPVFPPDSSFTKENYHHLVRVLSQTKPKAAIAHHDYIARVQHYISLSSDNHKLAEMLQKLTWISTSDIKDKKVSSNMGSLPYNGCRPNEMYLIQYTSGA TGIPKPVLVTAGAAAHNVRVARKAYDLYPNSVIVSWLPQYHDCGLQFLLLTIISGATSVLTSPGAFVNRPGLWLELISKFQATCTPVPSFSIPLVIKRGG VDKGTQPISLWSLKNLIIINEPIYKASVDRFVEMFKPFGLNPSCISPSYGLAENGTFVSTAWRGNCSNAASFRHIPSHNKLLPCARLASQREEEEDMDII VVDEETCELVVDGTEGEIWVSSPSNCSGYLGHPSLTREIFQARPRNKVSRCFVRTGDRGIIKEKKDVIKLPNNQEIHPHFIETAAQNSCQKFLRGGCLAA FEMSSTIVLVAEIQRHEKDVKVLKRICEWAKQAVLKEEKVEIGLMVLVKSGCVPKTTSGKIQRWAAKDMLIRGKMSVVMEMQFEDNNERFLPSYEAIGKA NKEIRCQGGNRTSTVAEDRDQEISLAFSSTPRRPPMLSLL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21230		4CL5	4-coumarate:CoA ligase 5 (.1)		Potri.005G227800 [exp]	0	1
AT1G34790	C2H2ZnF	WIP1, TT1	WIP domain protein 1, transpar...		Potri.002G098200 [exp]	6.00	0.7551
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.018G099601 [exp]	6.70	0.7421
					Potri.006G157801 [exp]	12.40	0.6922
AT5G28780			PIF1 helicase (.1)		Potri.008G203701 [exp]	14.07	0.8463
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.011G040400 [exp]	44.59	0.6602
					Potri.003G022400 [exp]	78.80	0.5924
AT1G65352			Putative membrane lipoprotein ...		Potri.005G044333 [exp]	127.90	0.5501
AT5G13620			unknown protein		Potri.001G155600 [exp]	135.62	0.5507
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004300 [exp]	142.80	0.6304
AT4G15093			catalytic LigB subunit of arom...		Potri.018G136303 [exp]	198.41	0.5418

Compare expression of checked genes

Potri.005G227800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.