Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36550 328 / 8e-102 ARM repeat superfamily protein (.1) AT1G67530 277 / 5e-82 ARM repeat superfamily protein (.1.2) AT1G24330 271 / 4e-80 ARM repeat superfamily protein (.1) AT1G27910 250 / 2e-72 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT5G67340 110 / 9e-25 ARM repeat superfamily protein (.1) AT1G23030 108 / 3e-24 PUB11 ARM repeat superfamily protein (.1) AT5G42340 103 / 7e-23 PUB15 Plant U-Box 15 (.1) AT3G46510 103 / 1e-22 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G71020 92 / 3e-19 ARM repeat superfamily protein (.1.2) AT3G07360 90 / 9e-19 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023700 [exp] 535 / 0 AT1G67530 328 / 9e-101 ARM repeat superfamily protein (.1.2) Potri.005G122100 [exp] 520 / 8e-174 AT4G36550 441 / 2e-143 ARM repeat superfamily protein (.1) Potri.010G058000 [exp] 267 / 2e-78 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.008G177100 [exp] 255 / 7e-74 AT1G24330 1025 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 109 / 2e-24 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G009900 [exp] 108 / 3e-24 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.001G238500 [exp] 102 / 2e-22 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 100 / 7e-22 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G113900 [exp] 99 / 3e-21 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028307 [exp] 447 / 3e-147 AT4G36550 417 / 1e-135 ARM repeat superfamily protein (.1) Lus10041754 [exp] 436 / 8e-143 AT4G36550 404 / 6e-131 ARM repeat superfamily protein (.1) Lus10006427 [exp] 286 / 2e-85 AT1G24330 993 / 0.0 ARM repeat superfamily protein (.1) Lus10011370 [exp] 285 / 9e-85 AT1G24330 1000 / 0.0 ARM repeat superfamily protein (.1) Lus10015801 [exp] 228 / 7e-64 AT1G24330 1027 / 0.0 ARM repeat superfamily protein (.1) Lus10037005 [exp] 226 / 3e-63 AT1G24330 1029 / 0.0 ARM repeat superfamily protein (.1) Lus10016565 [exp] 110 / 8e-25 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 107 / 9e-24 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10012260 [exp] 105 / 4e-23 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10017444 [exp] 99 / 4e-21 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain CL0020 [poplar] [flax] TPR PF05804 [poplar] [flax] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Potri.005G228100.4 pacid=42803476 polypeptide=Potri.005G228100.4.p locus=Potri.005G228100 ID=Potri.005G228100.4.v4.1 annot-version=v4.1 ATGGGGAAGGATCGTGCTAAAGATGTGGAACTCCCTAGCTGCTTTTCTGTCAAGGTGCATCGCTCAATGTGCTTAGAACTTAAGAACTTTGTGGACAGAA TCTCACAGATATATCCAGCAATCGAGTCTGCTCGGCCTCGATGTTCTTCAGGAGTGCAGGCGTTGTGCTCTCTGGTTGTCAATATGGATACAGCAAAGCT ACTTATCCAGCACTGTGCCAATTCCAGTAAACTCTACCTGGCAATTACGGCAGAGAGGATACTCTTGAAATGCAAAAGGATACAAAATGCTTTGGATTTA TGTTTAGGCCAAATTCAAAATGTGGTTCCACCTTTTCTGGCTGCCAAGATATCTGGAATTATTGAAGACCTCAGGAGTGCAAAGTTTCACCTAGAATCTT CTGAGGAAGAGGCTGGGAAGGTTGTGCTAGCGCTGATTAGGCGGGGCATACCTGCATCAGACTGTATTGAAAATTCAGAACTTGAGGCTCTTCGACTTGC AGCTTCGAGTCTGAAAATTACATCCCGGCTGGCTCTTTTGGCAGAGAAAAGGTCCATTAAGAGACTGCTTGATAAAGTTCATCAAACTGGCCTGACAAAG GAGACGATTTTGAAGTGTCTCCTGAGTCTTTTGAGGAAGTACGGAGAATTAATTCAGCAAGATCAAACCAAGAACAACCTTTCTATGCACAAAGAGAAAA AATGCCAGTCCACTTATCCAGAAGCTTTTGTAGATTGGTACGAGACACGAACACAAGCTGATGGCACACCAAAACCTCCCATTGAATTTGAATGCCCCAT CTCTACGAGACTCATGTATGATCCTGTAATTATTGCATCTGGGAAAACATACGAACGAGTTTGGATTGAGAAATGGTTTAGTGAGGGTCACGAGACGTGC CCAATGACTAATATTAGGCTGGAGAATCTGTCCCTGACTCCAAACGTTGCAATGAAGGGCCTCATTTCAAAATGGTGTTCCCTGCATGAAATCATTGTTT CTGATCCACGTCAGCGGTCAAAGTTTTCTCCAGTTTCCTCACTGAAATGCACATCCCCCGAATCTGTTACTAGCTTTGGCAGCTCCATGAATGACTTGCG CCTTCAAGTTAGCAACGTCTCACTTCAATCTTCGGATACAAACTGTGGTTCGCATTTAATTGATGATGATGGTAATATTCGTTCAAGTGCTAGGCTCCCT CGAATGAAAGAAGAAATGTGCACACGCCACTCATCTACAAATGGTTGTAGTATTGGCTTGGCCTCTCTTACCAAGCTAGCTTCACTTCCCTGGAAATCCC AATGCAAGACAGTGCAAGATGTCAAAGAGGAACTGAATAAAAATAACCAAGCATGCGATTGCGTATTTTCTGACACTTCTATGAAATCGCTGATAAAATT CTTGAAGGTTGCACATGACTTGTGTGACGTAAGAGCCCAGAAAGATTCAGTTGATGTGATTTTGGCAGTTTTGAGTGAAGACAGAGTTGAAATGCCTGCT TTTCATGGAGATTCAATATATGTGTTAGCATCGCTTCTTGATTCTAAAATCAGTGGAAAAGCTCTTGCAATCCTGGAATTGCTGTCTCACCATCAGTTTT ACAAGTCTGCAGTTATAGCATCTGGAGTTCTACCTTCAATCCTGAAAATCCTTGATTCTCAGAATACGGAATCCCTTGAGCTTGCTATGAAGATACTTTG TAATGTGTCCTACGACAGTGACATAGCATATCACATTGTCTATTTGGATTTCATCCCAAGCTTGGTTCCTTTTCTATGCGACCTCAACCTTTCACGGTAT TGCCGTACTGTTCTGAAGAACTTATGCCGGATCGAGGAGGGTAGGATTGCAATCGTTGAAACCGATTCATGTATCACTTCAATGGCCCAACTTCTTGAAA CTGGTAGTGAGCTGGAACAAGAAACCACAATAGAAGTTCTCTCCCTATGTTATGAGGAGCTTGATTGTTGTCAACTGATCAAGGGAGGAAGCATCATCCA ATCATTGTTCTGTATATCTGTCAATGGGACATCAAGAGGAAAAGCCATTGCCATGGAATTGCTCCAGCTCTTAGGGCATACTACAGAAGGTGTTAGTTTT GACTTGACCATGGACATCTCAAGTGGCTCCAGCAATCACAATAAAGGAGAAAAATCATCTTCCATATTTGGGTATCTGGGAAGGAAAATCTCAGGATTCT TACATTAG
AA sequence Show only first row Show all	>Potri.005G228100.4 pacid=42803476 polypeptide=Potri.005G228100.4.p locus=Potri.005G228100 ID=Potri.005G228100.4.v4.1 annot-version=v4.1 MGKDRAKDVELPSCFSVKVHRSMCLELKNFVDRISQIYPAIESARPRCSSGVQALCSLVVNMDTAKLLIQHCANSSKLYLAITAERILLKCKRIQNALDL CLGQIQNVVPPFLAAKISGIIEDLRSAKFHLESSEEEAGKVVLALIRRGIPASDCIENSELEALRLAASSLKITSRLALLAEKRSIKRLLDKVHQTGLTK ETILKCLLSLLRKYGELIQQDQTKNNLSMHKEKKCQSTYPEAFVDWYETRTQADGTPKPPIEFECPISTRLMYDPVIIASGKTYERVWIEKWFSEGHETC PMTNIRLENLSLTPNVAMKGLISKWCSLHEIIVSDPRQRSKFSPVSSLKCTSPESVTSFGSSMNDLRLQVSNVSLQSSDTNCGSHLIDDDGNIRSSARLP RMKEEMCTRHSSTNGCSIGLASLTKLASLPWKSQCKTVQDVKEELNKNNQACDCVFSDTSMKSLIKFLKVAHDLCDVRAQKDSVDVILAVLSEDRVEMPA FHGDSIYVLASLLDSKISGKALAILELLSHHQFYKSAVIASGVLPSILKILDSQNTESLELAMKILCNVSYDSDIAYHIVYLDFIPSLVPFLCDLNLSRY CRTVLKNLCRIEEGRIAIVETDSCITSMAQLLETGSELEQETTIEVLSLCYEELDCCQLIKGGSIIQSLFCISVNGTSRGKAIAMELLQLLGHTTEGVSF DLTMDISSGSSNHNKGEKSSSIFGYLGRKISGFLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36550			ARM repeat superfamily protein...		Potri.005G228100 [exp]	0	1
AT3G61670			Protein of unknown function (D...		Potri.001G093900 [exp]	2.82	0.9383
AT1G07650			Leucine-rich repeat transmembr...		Potri.004G063900 [exp]	6.70	0.9460
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.001G011500 [exp]	8.00	0.9361	PRX1.12
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.002G009000 [exp]	9.79	0.9140	HMGB901,Pt-HMGB3.2
AT4G12250		GAE5	UDP-D-glucuronate 4-epimerase ...		Potri.003G114600 [exp]	10.19	0.9314
AT5G20190			Tetratricopeptide repeat (TPR)...		Potri.006G068200 [exp]	14.07	0.9350
AT1G34300			lectin protein kinase family p...		Potri.013G115800 [exp]	15.87	0.9319
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043500 [exp]	16.58	0.9325
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Potri.007G080600 [exp]	18.81	0.9378	GCN2.1
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.002G179800 [exp]	19.05	0.9138

Compare expression of checked genes

Potri.005G228100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.