Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19520 649 / 0 NFD5 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT1G01970 199 / 6e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G42310 118 / 3e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G18940 97 / 2e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35130 95 / 5e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G41170 94 / 6e-20 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G11690 93 / 1e-19 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 86 / 4e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09680 85 / 6e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 85 / 9e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G034900 [exp] 435 / 4e-147 AT1G19520 296 / 2e-93 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.014G070500 [exp] 217 / 2e-63 AT1G01970 469 / 7e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G250200 [exp] 109 / 1e-24 AT5G42310 974 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G010900 [exp] 105 / 2e-23 AT5G42310 939 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050500 [exp] 99 / 3e-21 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.007G123900 [exp] 99 / 6e-21 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 97 / 1e-20 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.018G037200 [exp] 95 / 5e-20 AT5G25630 694 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G257300 [exp] 94 / 1e-19 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030026 [exp] 704 / 0 AT1G19520 660 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10035298 [exp] 688 / 0 AT1G19520 658 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10009299 [exp] 208 / 6e-61 AT1G01970 430 / 1e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034924 [exp] 112 / 1e-25 AT5G21222 599 / 0.0 protein kinase family protein (.1) Lus10001964 [exp] 92 / 1e-20 AT1G47271 202 / 5e-66 Cystathionine beta-synthase (CBS) family protein (.1) Lus10032648 [exp] 92 / 2e-20 AT3G16890 225 / 1e-69 pentatricopeptide (PPR) domain protein 40 (.1) Lus10036020 [exp] 97 / 3e-20 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 96 / 4e-20 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016009 [exp] 96 / 4e-20 AT5G42310 921 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018318 [exp] 94 / 2e-19 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G228200.2 pacid=42805422 polypeptide=Potri.005G228200.2.p locus=Potri.005G228200 ID=Potri.005G228200.2.v4.1 annot-version=v4.1 ATGAATTTGAAGCGCTTAGTTAATAGGCAAGTAGTTAACAACTTATCGAGATTCAATGGAAGAGTGCGGACTGGAAGAGATTTCTCTACCATTACAGCCT CAATCCATTCCTCAAACAGCAGCTGTGATGGTGTGGTTCCTTATAATTGTAGTAACTCGACACCCATGTTGTCCTTTAATAGATACATGCACACTATTGG AGAAACAAAGTTGATTGGGTCGAGTTTTAATCCGAAACACAATGCTAATGATTCCGAGGACGAGGATGAAACCATGAATGAGTTCTTGTCGCGATTTGTG TGGATAATGCGTGGGAAGTTAACTGAAGTGTATAAGGATAGTGATAAAGAGACGATTAATGGTATGCTTTTGGTTATTGTTGGAGAAGTTGTTTCGGAAA TGGAAAAGGGTGGTCTTGAACAAATGCTTGATGTTTCGGTGGCTACGTTGTCTCAGGGTTTCAGTAGGGATTTGTGGAAGACAGTGTGGGAAGTGAGCAA TGCAGTGTTGGCGGATATGGAAAAGGAAAGGAAGAAGGAGAAAATGAAGGGTTTTTTGCAGTGTGAGGAGGTGCAGGAATTGTGTAGGTTTGCTGCTGAG ATTGGAATCCGAGGGGACATGATGAGGGACTTTAGGTTCAAATGGGCGCGTGAGAAGATGGAAGAGAGTGACTTTTATGAGGGTTTGAAGCGTCTCAGAG AAGAAGTGAGAGCCCAGGAGAAAGCAGAAGAAGAGGGAAAGAATGCTGTGGCCATGGGTGAAGAGGCTGCGATCATGGATGAGGAGAAACCTAAGGTCGT TACTCTTCCTATGAGACATGGGAAGATAAATTACAAGATTTATGGACTTGATCTTTCCAATCCTAAGTGGGCTAAAGTTGCTGATAGAATCCATGAGTCA GAAAAGCTCGATTGGCCTGAGGAACCGAAGCCAATATCTGGGAAATGCAAAATTGTTACCGAGAAAATCCTTGAATTGAAAGAGGAGGATGACCCTTCTC CACTGTTAGCTCAATGGGCAGAGCTTCAAAAGCCTAGCAGGATTGATTGGTTCACTTTGTTGGATAAGTTGAAAGAACAGAATACTCGTTTATACCCTAA GGTAGAGGAAGTTTTGTTGAGCGAAAAATCCTTCCAAGCTAACATCCGCGACTACAGCAAGATTATTGATGCCCATGCTAAACAGAACCGCATAGAAGAT GCTGAAAGAATTGTTGAGAAGATGAATGAAAATGGTATTCAACCAGATGCTTTGACCACTAATATTTTGGTACACATGTACAGCAAGGCAGGAAATCTTG ACCGTGCTAGAGAAGCATTGGAAAGCTTGAGGAGACTTGGTTTCCGACCAGACAGAGAGATCTACAATTCGATGATCATGGCATATGTAAATGCTGGTCA ACCTAAGTTGGCTGAATTATTGATGAGAGAGATGGAGGCAAGAGACATCAAGCCTACAATGGAGATCTACATGACTTTGCTTCGGTCATTTTCACAACAT GGAGATGTTGGTGGAGCTGGACGAATTGCAACCACAATGCAGTTTGCAGGATTCCAGCCGAATTTGGAGTCTTGTACATTGCTTGTTGAGACATTTGGGC AAGTTGGTGATCCTGATCAGGCAAGAAACAACTTTGACTATTTGATGAGGCTTGGACACAAGCCTGATGACAGGTGCACTGCAGGCATGATTGCAGCTTA TGAGAAAAAGAATATGTTGGATAAGGCTCTCAAACTTTTGTTAGAGCTCGAGCAGGATGGCTTTGAGCCTGGACTTGCTACTGACACTGTCCTTGTCGAT TGGTTGGGGAAATTGCAGCTGGTTGATGAGGTTGAGCAGCTATTGGGCAGGATTGCTGAGCAGGGCGAGGCTCCTCCTCTCAAGATTCAAGTTAGCCTTT GTGATATGTATGCAAGGGCTGGGGTCGAGAGGAAGGCTCTTCAGGCTTTGGGGGTTGTGGAAGCCAAGAAGGAGCAATTGGGGTTGCATGATTTTGAAAG GGTTGTAGGCGGGCTTATCGCTGGTGGGTTTGTGCAGGAGGCTCAAAGGGTACATGGGTTGATGGAGGCCCAGGGCTTTGCTTCAGAACATCTAAAGGTT GCGCTAACGGCATCTCAAGCTTTTTCCCGCAAGAGACCATCGAAATAG
AA sequence Show only first row Show all	>Potri.005G228200.2 pacid=42805422 polypeptide=Potri.005G228200.2.p locus=Potri.005G228200 ID=Potri.005G228200.2.v4.1 annot-version=v4.1 MNLKRLVNRQVVNNLSRFNGRVRTGRDFSTITASIHSSNSSCDGVVPYNCSNSTPMLSFNRYMHTIGETKLIGSSFNPKHNANDSEDEDETMNEFLSRFV WIMRGKLTEVYKDSDKETINGMLLVIVGEVVSEMEKGGLEQMLDVSVATLSQGFSRDLWKTVWEVSNAVLADMEKERKKEKMKGFLQCEEVQELCRFAAE IGIRGDMMRDFRFKWAREKMEESDFYEGLKRLREEVRAQEKAEEEGKNAVAMGEEAAIMDEEKPKVVTLPMRHGKINYKIYGLDLSNPKWAKVADRIHES EKLDWPEEPKPISGKCKIVTEKILELKEEDDPSPLLAQWAELQKPSRIDWFTLLDKLKEQNTRLYPKVEEVLLSEKSFQANIRDYSKIIDAHAKQNRIED AERIVEKMNENGIQPDALTTNILVHMYSKAGNLDRAREALESLRRLGFRPDREIYNSMIMAYVNAGQPKLAELLMREMEARDIKPTMEIYMTLLRSFSQH GDVGGAGRIATTMQFAGFQPNLESCTLLVETFGQVGDPDQARNNFDYLMRLGHKPDDRCTAGMIAAYEKKNMLDKALKLLLELEQDGFEPGLATDTVLVD WLGKLQLVDEVEQLLGRIAEQGEAPPLKIQVSLCDMYARAGVERKALQALGVVEAKKEQLGLHDFERVVGGLIAGGFVQEAQRVHGLMEAQGFASEHLKV ALTASQAFSRKRPSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Potri.005G228200 [exp]	0	1
AT4G02820			Pentatricopeptide repeat (PPR)...		Potri.005G208900 [exp]	2.82	0.6971
AT4G22350			Ubiquitin C-terminal hydrolase...		Potri.016G014000 [exp]	3.87	0.6941
AT5G49980		AFB5	auxin F-box protein 5 (.1)		Potri.002G102700 [exp]	4.89	0.6723
AT1G55630			Pentatricopeptide repeat (PPR)...		Potri.015G144100 [exp]	5.65	0.6312
AT1G50920			Nucleolar GTP-binding protein ...		Potri.001G258900 [exp]	6.24	0.7273
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.001G002000 [exp]	10.29	0.7174
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G034200 [exp]	17.14	0.6444
AT3G56680			Single-stranded nucleic acid b...		Potri.006G034700 [exp]	19.59	0.6671
AT1G78910			Pseudouridine synthase family ...		Potri.004G228200 [exp]	22.22	0.6561
AT5G50990			Tetratricopeptide repeat (TPR)...		Potri.012G109300 [exp]	22.91	0.6686

Compare expression of checked genes

Potri.005G228200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.