Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75260 104 / 1e-23 oxidoreductases, acting on NADH or NADPH (.1) AT2G46630 50 / 3e-06 unknown protein AT1G63310 43 / 9e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G034700 [exp] 464 / 5e-159 AT1G75260 183 / 4e-51 oxidoreductases, acting on NADH or NADPH (.1) Potri.014G102466 [exp] 58 / 8e-09 AT2G46630 114 / 1e-27 unknown protein Potri.002G175400 [exp] 53 / 5e-07 AT2G46630 107 / 3e-25 unknown protein Potri.001G452900 [exp] 48 / 3e-06 AT1G63310 92 / 3e-24 unknown protein Potri.011G149100 [exp] 44 / 5e-05 AT1G63310 95 / 2e-25 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033210 [exp] 164 / 9e-45 AT1G75260 165 / 2e-45 oxidoreductases, acting on NADH or NADPH (.1) Lus10010832 [exp] 162 / 3e-44 AT1G75260 164 / 6e-45 oxidoreductases, acting on NADH or NADPH (.1) Lus10001963 [exp] 138 / 5e-35 AT1G75260 115 / 2e-27 oxidoreductases, acting on NADH or NADPH (.1) Lus10005994 [exp] 50 / 3e-06 AT2G46630 / unknown protein Lus10012616 [exp] 48 / 8e-06 AT1G75260 71 / 3e-14 oxidoreductases, acting on NADH or NADPH (.1) Lus10030217 [exp] 47 / 2e-05 AT2G46630 51 / 1e-06 unknown protein Lus10033253 [exp] 43 / 0.0003 AT1G63310 78 / 3e-18 unknown protein Lus10008287 [exp] 42 / 0.0005 AT1G63310 76 / 3e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G228400.1 pacid=42804660 polypeptide=Potri.005G228400.1.p locus=Potri.005G228400 ID=Potri.005G228400.1.v4.1 annot-version=v4.1 ATGGCAGACCAGAGGCCATTCCGCTTTCGGCTCCCTTGGTTGTCCGTCGCTCCTGCTCCACGTCCTACAGCTGAACCCCAACCTCCTCGTCCTACAGTTC AAATTCAAGCCCCAGCCCGGCCAACCACCACAATCCCCATTCAGCGGCCACCTTTTCGACCAGCAGGGATAGCCCCAGCACCAACTCCTACCACTCAGAT TACGGCACTAGTACGAACTGAACCTCAGCCGCCACCTCGTGCAGCTGCTGAATCCCAAGCCACTTCTCAACTATCATCACCATCTCGTGCAACAATCCCA ACACGGGCTGGTTCAGAGCCACCATCACCATCTCGAGAAACACGGGCTGCCTCTGTGCCACCATCACCATCTCGTGCAACTCCACAATCAAGAGCTGCAT CGGTGCCCCCATCACCCTCTCGTGCAACAACCCAAACCCAAGCTGCCTCCCAAACCCAGTCACCATCTCGTGCAACTCCTCAATCAAGAACTGCATCTGT GCCACCTTCTCCTTCTCGCACCACTTCCCAGCCCCGGACAGCAGCACTGGCAGTCCAACAACCTGAATCTCCATCTCGTTTGGCCTCTCGAGTTCCAGGT AAAACATCCTCACAGCCCTCTTCTCCTTCTAAGATAGCTACCCAAGTGCAGCCAACAGTTTCCCGGTCCCCATCAAAGAAATTGCAGCTAGCAACACAAG AGACCTCTCAGCCTCCACCGACATCTACTCAATCCGCCACTCAACAACAAGAAACAAATCCAGCACTATCTTTTCCCTTGTCACAAGTGCCTCAAGAAAA GACAGAAATCAGAGCAGAGAATGTCTCTCGGCAACAACAACAATCAGAGCCTGTACAAGCATCAGGTGTTGTGAGAGCAGCAACAGCAACACCAACTTCT GTGGCAGCACTTGAGATACCTGCAGCATCACAAAAATCAGATTCTTACACCATAGGTCCTGATCATCCTATGAATCTTTCAGAACAGCTGAAAAACGTAA AGGAAGACATTTTTGAAAGGAAAAAGACTACTGTTAGCTCAAATGGGGAAACTGCGAAATCTGCAAGAGCCCGGTATGTATTGGGCGAATCTCATCAAAA ATCATCCATGTCCAATGGAGAAAAAGTTCCCCTGCACAAAGAAATCAGGGAAGACATTTCCAAGTTTGTTCACAAGCTGGGAATGGAGCACATAAAGCAT CCCATTGGTGAAAAGCCTGTCAGCATTGTAACTCTAGCAGGTGAAAACAGAGGAGCTTCAATGTACGAGGGCTCTGAACCAACAAGAAAGGATGGATCAG TCCACATCCATCATGGTTATAAGATCAATCCAGATGAGAGCAGCGAAAATCCTACTGATGGAGAAGGAAGTTCGAAGGGTGGAAAGTTCAAAGATCTGCT GACAAAAGAAGATCCAGCAATGAAGGCATATATCAACAGTAATACACAAAGTGTCAATAACTCGATTTTGTTTGAAAGTTCACTAAACGAAAGAAGTCCT GGTGTACAGCTGCATCTCTCTCATAACGATGAAGAACCCAGTGAGTACAGTGCTAAACCAGGTCCTCTCGAGACACACAAGGGTGAATTCAAAGTCACCC CTGCTGAGATGCTTACTCATGAACCGACAGTAAAATGA
AA sequence Show only first row Show all	>Potri.005G228400.1 pacid=42804660 polypeptide=Potri.005G228400.1.p locus=Potri.005G228400 ID=Potri.005G228400.1.v4.1 annot-version=v4.1 MADQRPFRFRLPWLSVAPAPRPTAEPQPPRPTVQIQAPARPTTTIPIQRPPFRPAGIAPAPTPTTQITALVRTEPQPPPRAAAESQATSQLSSPSRATIP TRAGSEPPSPSRETRAASVPPSPSRATPQSRAASVPPSPSRATTQTQAASQTQSPSRATPQSRTASVPPSPSRTTSQPRTAALAVQQPESPSRLASRVPG KTSSQPSSPSKIATQVQPTVSRSPSKKLQLATQETSQPPPTSTQSATQQQETNPALSFPLSQVPQEKTEIRAENVSRQQQQSEPVQASGVVRAATATPTS VAALEIPAASQKSDSYTIGPDHPMNLSEQLKNVKEDIFERKKTTVSSNGETAKSARARYVLGESHQKSSMSNGEKVPLHKEIREDISKFVHKLGMEHIKH PIGEKPVSIVTLAGENRGASMYEGSEPTRKDGSVHIHHGYKINPDESSENPTDGEGSSKGGKFKDLLTKEDPAMKAYINSNTQSVNNSILFESSLNERSP GVQLHLSHNDEEPSEYSAKPGPLETHKGEFKVTPAEMLTHEPTVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75260			oxidoreductases, acting on NAD...		Potri.005G228400 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Potri.002G048832 [exp]	2.82	0.9656
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191200 [exp]	3.31	0.9680
AT2G36020		HVA22J	HVA22-like protein J (.1)		Potri.006G205300 [exp]	4.69	0.9319
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191101 [exp]	7.14	0.9606
AT3G50120			Plant protein of unknown funct...		Potri.006G042500 [exp]	7.74	0.9399
AT5G37180		ATSUS5, SUS5	ARABIDOPSIS THALIANA SUCROSE S...		Potri.017G139100 [exp]	9.16	0.9431
AT5G55530			Calcium-dependent lipid-bindin...		Potri.001G361100 [exp]	10.72	0.9217
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.012G090400 [exp]	11.48	0.9366
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G036200 [exp]	12.40	0.9291
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.015G029100 [exp]	12.64	0.9349

Compare expression of checked genes

Potri.005G228400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.