Plant FIBer expression Database

Potri.005G228550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G228550.1 pacid=42805619 polypeptide=Potri.005G228550.1.p locus=Potri.005G228550 ID=Potri.005G228550.1.v4.1 annot-version=v4.1
ATGCATCAAGTAGGGACTCAATTTTGGCAGAAGACGCGTTACATACCTCGTTCGCTGGCATTGCTTACTCTGGCAATGGCATCAAACTCATCAATCAAAC
AATCAGAAGAACTGAAATTTTATAGCATGAATATAGTTTGTGTGGCTCATGGCTGCCCAGAAATCTTATCCACCTCGAATACGCCAATGACATTCATGCT
TTGGAGCCACCTTCGTCTGTCCCTGTTGGCATATATTACCAGCTGGGAAATTTCCAACCATAACAAGCTTGATGCAACCATCTATTACATGGGGTCAGTT
CAATGCATGGAACAAGGGCTCCACGTTTCAATTCTATCAATGATCTAA
AA sequence
>Potri.005G228550.1 pacid=42805619 polypeptide=Potri.005G228550.1.p locus=Potri.005G228550 ID=Potri.005G228550.1.v4.1 annot-version=v4.1
MHQVGTQFWQKTRYIPRSLALLTLAMASNSSIKQSEELKFYSMNIVCVAHGCPEILSTSNTPMTFMLWSHLRLSLLAYITSWEISNHNKLDATIYYMGSV
QCMEQGLHVSILSMI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G228550
[exp]
0 1
AT5G50690 ATHSD7 hydroxysteroid dehydrogenase 7... Potri.016G048900
[exp]
4.24 0.9684
AT3G03620 MATE efflux family protein (.1... Potri.013G069250
[exp]
5.09 0.9610
AT5G62360 Plant invertase/pectin methyle... Potri.015G128200
[exp]
9.38 0.9548
AT1G52827 ATCDT1 cadmium tolerance 1 (.1) Potri.001G177333
[exp]
15.81 0.9513
AT4G34530 bHLH bHLH063, CIB1 cryptochrome-interacting basic... Potri.005G121850
[exp]
16.12 0.9463
Potri.017G128400
[exp]
17.83 0.9501
AT5G53390 O-acyltransferase (WSD1-like) ... Potri.007G139501
[exp]
17.88 0.9433
AT2G14830 Regulator of Vps4 activity in ... Potri.011G122800
[exp]
18.43 0.9430
AT5G57800 CER3, FLP1, YRE... FACELESS POLLEN 1, ECERIFERUM ... Potri.006G177500
[exp]
18.76 0.9455
AT2G18360 alpha/beta-Hydrolases superfam... Potri.005G122600
[exp]
21.49 0.9559

Potri.005G228550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.