Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PCBER7
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 433 / 6e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G39230 428 / 5e-152 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 410 / 1e-144 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 367 / 4e-128 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 285 / 2e-95 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 263 / 7e-87 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 258 / 8e-85 ATPRR2 pinoresinol reductase 2 (.1) AT5G18660 43 / 0.0002 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G034400 [exp] 578 / 0 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118100 [exp] 461 / 6e-165 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 438 / 5e-156 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 409 / 4e-144 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 384 / 2e-134 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 317 / 2e-108 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.004G156650 [exp] 281 / 2e-95 AT4G39230 322 / 1e-111 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133200 [exp] 278 / 6e-93 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.007G123700 [exp] 277 / 2e-92 AT1G75280 284 / 4e-95 NmrA-like negative transcriptional regulator family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026348 [exp] 439 / 1e-156 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 439 / 3e-156 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 428 / 4e-152 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 426 / 3e-151 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 408 / 3e-144 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 409 / 2e-142 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 357 / 9e-125 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 291 / 9e-98 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10010403 [exp] 272 / 2e-90 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1) Lus10007599 [exp] 278 / 6e-89 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.005G228700.1 pacid=42804689 polypeptide=Potri.005G228700.1.p locus=Potri.005G228700 ID=Potri.005G228700.1.v4.1 annot-version=v4.1 ATGGCTGACAAAAGCAAGATCTTGATCATTGGAGGCACTGGTTACATAGGAAAATTCATCGTGGAGGCAAGCGCCAAGGCCGGTCACCCCACTTTCGCTT TGGTTAGAGAGAGCACAGTCTCTGATCCTGTCAAAAGAAAACTTGTCGAGAATTTCAAGAACTTAGGCGTCACTTTGATAGATGGAGATATCGACGGCCA TGACAATTTGGTCAAGTCAATTAAGCAGGTGGATGTGGTGATATCAGCAATTGGGAACATGCAAATAGCAGATCAAACCAAGATCATTGCTGCCATTAAA GAAGCTGGCAATGTTAAGAGATTTTTCCCTTCAGAATTTACAATGGATGTGGATCATGTCAATGCTGTAGAGCCTGCGAAAACTGCATTCGCAATGAAGG CTCAGATTCGGCGTGCCATTGAGGCTGCGGGGATCCCCTACACTTATGTGTCTTCCAACGGCTTTGCTGCATATCATCTCGCTACGATGGCACAGCTTGG ACTTACTGCTCCTCCTAGAGACAAAATCACTATCTTAGGAGATGGCAATGCCAAGGCTGTTTTCAATAAGGAAGATGATATTGGAACCTACACCATCAAA GCAGTGGAAGATTCTAGAACATTGAACAAGACTGTCCTAATCAAGCCTCCTAAGAACATTTACTCTTTCAATGAGCTTATTGCCCTGTGGGAGAAAAAGA TTGGCAAAACCCTCGAAAAAACCTATGTTCCTGAAGAGAAACTTCTGAAGGACATCCAAGAGTCTCCAATTCCGATTAATATTCTTCTGTCAATCAACCA CTCAGCCTTCTTCAACGGTGACATGACCAACTTTGACATTGATCCATCATGGGGGGCTGAGGCCTCTGAGTTGTATCCAGATGTCAAATATACCACCGTG GAAGAGTACCTCGATCAGTTTGTCTGA
AA sequence Show only first row Show all	>Potri.005G228700.1 pacid=42804689 polypeptide=Potri.005G228700.1.p locus=Potri.005G228700 ID=Potri.005G228700.1.v4.1 annot-version=v4.1 MADKSKILIIGGTGYIGKFIVEASAKAGHPTFALVRESTVSDPVKRKLVENFKNLGVTLIDGDIDGHDNLVKSIKQVDVVISAIGNMQIADQTKIIAAIK EAGNVKRFFPSEFTMDVDHVNAVEPAKTAFAMKAQIRRAIEAAGIPYTYVSSNGFAAYHLATMAQLGLTAPPRDKITILGDGNAKAVFNKEDDIGTYTIK AVEDSRTLNKTVLIKPPKNIYSFNELIALWEKKIGKTLEKTYVPEEKLLKDIQESPIPINILLSINHSAFFNGDMTNFDIDPSWGAEASELYPDVKYTTV EEYLDQFV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75280			NmrA-like negative transcripti...		Potri.005G228700 [exp]	0	1	PCBER7
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.015G003100 [exp]	2.44	0.9019	COMT1,Pt-OMT1.2
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145832 [exp]	3.31	0.9312
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.014G115300 [exp]	5.09	0.8620
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.016G107300 [exp]	6.00	0.9257
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.001G078900 [exp]	14.49	0.9022	KOR1.2
AT4G26550			Got1/Sft2-like vescicle transp...		Potri.001G467200 [exp]	19.79	0.8726
AT1G63430			Leucine-rich repeat protein ki...		Potri.001G106600 [exp]	22.73	0.8484
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.008G053100 [exp]	25.45	0.8882	UXS1.2
AT4G20190			unknown protein		Potri.001G074300 [exp]	25.88	0.8388
AT1G23230			unknown protein		Potri.010G108350 [exp]	27.54	0.8627

Compare expression of checked genes

Potri.005G228700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.