Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RER1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21600 236 / 9e-80 ATRER1B endoplasmatic reticulum retrieval protein 1B (.1) AT4G39220 217 / 2e-72 ATRER1A Rer1 family protein (.1) AT2G18240 184 / 3e-59 Rer1 family protein (.1.2) AT2G23310 164 / 2e-51 ATRER1C1, ATRER1C Rer1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G034200 [exp] 300 / 4e-105 AT2G21600 265 / 3e-91 endoplasmatic reticulum retrieval protein 1B (.1) Potri.004G156900 [exp] 221 / 3e-74 AT4G39220 245 / 1e-83 Rer1 family protein (.1) Potri.009G118500 [exp] 218 / 2e-72 AT4G39220 224 / 2e-75 Rer1 family protein (.1) Potri.007G047800 [exp] 189 / 2e-61 AT4G39220 194 / 3e-63 Rer1 family protein (.1) Potri.004G156800 [exp] 177 / 2e-56 AT4G39220 251 / 6e-86 Rer1 family protein (.1) Potri.005G141700 [exp] 162 / 1e-50 AT2G23310 200 / 2e-65 Rer1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041766 [exp] 214 / 2e-71 AT2G21600 248 / 7e-85 endoplasmatic reticulum retrieval protein 1B (.1) Lus10028319 [exp] 214 / 3e-71 AT2G21600 249 / 4e-85 endoplasmatic reticulum retrieval protein 1B (.1) Lus10028317 [exp] 207 / 2e-68 AT4G39220 254 / 8e-87 Rer1 family protein (.1) Lus10041765 [exp] 206 / 1e-67 AT4G39220 250 / 5e-85 Rer1 family protein (.1) Lus10011502 [exp] 175 / 1e-55 AT4G39220 258 / 3e-88 Rer1 family protein (.1) Lus10019323 [exp] 174 / 4e-55 AT4G39220 259 / 6e-89 Rer1 family protein (.1) Lus10002889 [exp] 69 / 4e-15 AT4G39220 119 / 4e-35 Rer1 family protein (.1) Lus10002890 [exp] 52 / 3e-09 AT4G39220 112 / 7e-33 Rer1 family protein (.1) Lus10015498 [exp] 45 / 7e-06 AT4G28040 141 / 5e-41 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03248 [poplar] [flax] Rer1 Rer1 family
Representative CDS sequence Show only first row Show all	>Potri.005G228900.1 pacid=42802867 polypeptide=Potri.005G228900.1.p locus=Potri.005G228900 ID=Potri.005G228900.1.v4.1 annot-version=v4.1 ATGGAAGGAAATGGGGGTGATGCTGCCAATGTGGTGGCACCTCTTGCGAAGTGGAGAAATGATTTCTCTCGGGCATTCCAGTTCTATCTGGACCGATCCA CACCTCACCCGACAGAGAGGTGGCTGGGAACTCTTGCGGTTGCAGCAGTTTATGTGTTGCGTGCTTACTTTGTTCAAGGGTTTTACATCATCTCGTATGG TCTTGGAATTTATATCTTGAATTTGTTGATTGGGTTTCTGTCACCCAAGGTTGATCCTGAACTTGAAGTTTCGGATGACGCTTCTTTGCCAACTAAAGGA TCAGATGAGTTCAAGCCCTTTATCCGGCGCCTTCCTGAGTTTAAGTTCTGGTACGCCATCACCAAGGCTTTTTGTGTGGCCTTCCTTATGACCTTCTTCT CTGTATTTGATGTCCCTGTTTTCTGGCCCATATTACTCTGCTATTGGATTGTTCTGTTTGTCCTCACAATGAAGCGCCAAATCATGCACATGATCAAGTA CAAATATGTTCCATTCAGCAGAGGAAAGCAGAGGTATGGCAGGAAGAAGTCTGGTGCAAGCAGCAGTGGCTTGATGAGGGACTAA
AA sequence Show only first row Show all	>Potri.005G228900.1 pacid=42802867 polypeptide=Potri.005G228900.1.p locus=Potri.005G228900 ID=Potri.005G228900.1.v4.1 annot-version=v4.1 MEGNGGDAANVVAPLAKWRNDFSRAFQFYLDRSTPHPTERWLGTLAVAAVYVLRAYFVQGFYIISYGLGIYILNLLIGFLSPKVDPELEVSDDASLPTKG SDEFKPFIRRLPEFKFWYAITKAFCVAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQIMHMIKYKYVPFSRGKQRYGRKKSGASSSGLMRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.005G228900 [exp]	0	1	RER1.4
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Potri.003G053400 [exp]	1.00	0.8498
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.019G047200 [exp]	2.23	0.7566
AT2G06530		VPS2.1	SNF7 family protein (.1)		Potri.001G170400 [exp]	2.44	0.8077
AT1G16210			unknown protein		Potri.009G140200 [exp]	5.29	0.7523
AT3G20920			translocation protein-related ...		Potri.001G257500 [exp]	9.38	0.7380
AT2G29900		PS2	Presenilin-2 (.1)		Potri.015G058301 [exp]	10.24	0.7205
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Potri.001G420700 [exp]	10.39	0.6792
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.004G176600 [exp]	10.39	0.7853
AT3G06760			Drought-responsive family prot...		Potri.011G057200 [exp]	11.40	0.7256
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.001G270100 [exp]	11.53	0.7007	RAB11.15

Compare expression of checked genes

Potri.005G228900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.