Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19600 559 / 0 pfkB-like carbohydrate kinase family protein (.1) AT4G27600 78 / 1e-15 NARA5 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) AT5G03300 76 / 3e-15 ADK2 adenosine kinase 2 (.1) AT3G09820 68 / 2e-12 ADK1, ATADK1 adenosine kinase 1 (.1.2) AT1G66430 58 / 3e-09 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 57 / 7e-09 pfkB-like carbohydrate kinase family protein (.1) AT1G17160 55 / 4e-08 pfkB-like carbohydrate kinase family protein (.1.2) AT5G58730 51 / 7e-07 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 49 / 2e-06 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 49 / 4e-06 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G034000 [exp] 689 / 0 AT1G19600 556 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.013G078600 [exp] 82 / 4e-17 AT4G27600 588 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Potri.010G224300 [exp] 66 / 8e-12 AT5G03300 620 / 0.0 adenosine kinase 2 (.1) Potri.008G038100 [exp] 63 / 8e-11 AT5G03300 622 / 0.0 adenosine kinase 2 (.1) Potri.011G114100 [exp] 57 / 5e-09 AT1G17160 474 / 8e-168 pfkB-like carbohydrate kinase family protein (.1.2) Potri.004G089300 [exp] 55 / 4e-08 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 52 / 4e-07 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 48 / 5e-06 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 48 / 6e-06 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024268 [exp] 568 / 0 AT1G19600 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10007397 [exp] 565 / 0 AT1G19600 518 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026867 [exp] 86 / 6e-18 AT4G27600 585 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Lus10013645 [exp] 84 / 2e-17 AT4G27600 580 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Lus10023197 [exp] 69 / 7e-13 AT5G03300 590 / 0.0 adenosine kinase 2 (.1) Lus10042467 [exp] 63 / 9e-11 AT1G17160 497 / 6e-177 pfkB-like carbohydrate kinase family protein (.1.2) Lus10009220 [exp] 61 / 5e-10 AT5G03300 501 / 7e-176 adenosine kinase 2 (.1) Lus10023532 [exp] 58 / 3e-09 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10040417 [exp] 58 / 5e-09 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10026199 [exp] 57 / 1e-08 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [poplar] [flax] Ribokinase PF00294 [poplar] [flax] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Potri.005G229100.1 pacid=42805307 polypeptide=Potri.005G229100.1.p locus=Potri.005G229100 ID=Potri.005G229100.1.v4.1 annot-version=v4.1 ATGGGAGCCGAAGCCTTGCCTAGGAATGACGAGATTGCTGCTGCTGCTGTCTCTTCTCATCCTCTCATACTTGGTCTCCAGCCAGCAGCTCTTGTCGACC ACGTGGCACCTGTTGATTGGTCTTTGCTTGACCAAATCCCTGGTGACCGTGGTGGCTCAATGCCTGTTGCAATTGAAGAGCTTGACCATATACTAGAAGC GGTGAAAGCACATAAGCTTGCTTCGCCTGATGAATTATCTCCTATGAAGACCATGGCTGGCGGAAGCGTAGCAAATACCATTAGAGGACTGAGTGCAGGC TTTGGAGTCTCTTGTGGGATTATTGGGGCATGTGGGGATGATGAGCAAGGCAAGTTATTTGTGAGTAATATGAGCTTTAGTAGAGTGAATCTTTCGAGAT TGAGGATGAAGCAGGGACACACAGCTCAGTGCATTTGCATGGTTGATGAATTAGCCAATCGTACAATGCGACCCTGCCTCTCAAGTGCTGTCAAAATTCA GGCGGATGAATTGACCAAGGAGGATTTTAAAGGCTCCAAGTGGTTGGTGCTGAGATATGCAATATTCAATTTGGATGTTATTCAAGCAGCTATTCGGATT GCAAAGCAAGAGGGTCTTCTTGTCTCATTGGATTTAGCCAGTTTTGAGATGGTTCGAAACTTTAGATCATCTCTTCAACAGTTACTGGAGTCTGGGGACA TAGACCTCTGCTTTGCTAACGAGGATGAAGCAATGGAGTTGTTGAGGGGTGAACAAACTTCTGACCCTGAGGCTGCTGTGGAATTCTTGGCCAAACATTG CAAGTGGGCTGTTGTTACTTTAGGTGCTAATGGTTGCATTGCGAGGCATGGAAAAGAGATTGTCCGAGTTCCAGCTATCGGGGAAGCAAAGGCTACTGAT GCCACTGGAGCAGGAGATCTCTTTGCAGGTGGGTTTTTATATGGACTGATCAAAGGACTGTCTTTGGAGGAATGCTGCAAAGCCGGTGCCTGTAGTGGTG GCTCTGTCATCCGTGCACTCGGGGGTGAGGTAACCCCAGAGAATTGGCAGTGGATGTATAAGCAGATGCAGATCAAGGGCCTCCCTCTTCCTGATAACCG CAATTGA
AA sequence Show only first row Show all	>Potri.005G229100.1 pacid=42805307 polypeptide=Potri.005G229100.1.p locus=Potri.005G229100 ID=Potri.005G229100.1.v4.1 annot-version=v4.1 MGAEALPRNDEIAAAAVSSHPLILGLQPAALVDHVAPVDWSLLDQIPGDRGGSMPVAIEELDHILEAVKAHKLASPDELSPMKTMAGGSVANTIRGLSAG FGVSCGIIGACGDDEQGKLFVSNMSFSRVNLSRLRMKQGHTAQCICMVDELANRTMRPCLSSAVKIQADELTKEDFKGSKWLVLRYAIFNLDVIQAAIRI AKQEGLLVSLDLASFEMVRNFRSSLQQLLESGDIDLCFANEDEAMELLRGEQTSDPEAAVEFLAKHCKWAVVTLGANGCIARHGKEIVRVPAIGEAKATD ATGAGDLFAGGFLYGLIKGLSLEECCKAGACSGGSVIRALGGEVTPENWQWMYKQMQIKGLPLPDNRN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19600			pfkB-like carbohydrate kinase ...		Potri.005G229100 [exp]	0	1
AT1G15020		QSO2, ATQSOX1	quiescin-sulfhydryl oxidase 1 ...		Potri.008G127300 [exp]	13.60	0.7928
AT4G32630			ArfGap/RecO-like zinc finger d...		Potri.018G035000 [exp]	48.98	0.7019
AT1G05170			Galactosyltransferase family p...		Potri.011G004200 [exp]	88.79	0.7099
AT2G36080	B3	ABS2, NGAL1	AP2/B3-like transcriptional fa...		Potri.016G074500 [exp]	98.92	0.7202
AT3G14172			unknown protein		Potri.019G064000 [exp]	248.35	0.6778

Compare expression of checked genes

Potri.005G229100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.