Plant FIBer expression Database

Potri.005G229400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75330 561 / 0 OTC ornithine carbamoyltransferase (.1)
AT3G20330 105 / 2e-25 PYRB PYRIMIDINE B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G357200
[exp]
99 / 6e-23 AT3G20330 550 / 0.0 PYRIMIDINE B (.1)
Potri.002G033701
[exp]
79 / 1e-18 AT1G75330 74 / 3e-17 ornithine carbamoyltransferase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033203
[exp]
610 / 0 AT1G75330 546 / 0.0 ornithine carbamoyltransferase (.1)
Lus10010641
[exp]
609 / 0 AT1G75330 547 / 0.0 ornithine carbamoyltransferase (.1)
Lus10013346
[exp]
100 / 3e-23 AT3G20330 547 / 0.0 PYRIMIDINE B (.1)
Lus10000002
[exp]
85 / 2e-20 AT1G75330 85 / 2e-21 ornithine carbamoyltransferase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0399 Asp-glut_race PF00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
CL0399 PF02729 OTCace_N Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
Representative CDS sequence
>Potri.005G229400.1 pacid=42804394 polypeptide=Potri.005G229400.1.p locus=Potri.005G229400 ID=Potri.005G229400.1.v4.1 annot-version=v4.1
ATGGCGGCGATTTCTTGTCACTGCGCAGTTCCATCGAAAAAAGTCTCTCTCTCCTCTTCATCTTCTGCTTTGTCCACCACTCCTCTCTCTCGATGCTCCC
GCTTCTCAGCCGTGTCGGTGCCGTCTCGAGCTAGTCGTGGAAGAATCTCGTGCCAGATTTCCTCATCCTCTGCTACTTCTCCTCCTCCTCCATCTTCCGT
CAACGGTCCAGCAAAAGCAGGGATGGAGGATTTTCTGCACATCAGTGATTTTGACAAAGCGACTATTATGAAGATCTTAGACCGGGCTGCAGAAGTCAAG
GCAGTGATAAAATCTGGAGACAGGACATTCCTTCCATTTAAAGGGAAGACAATGGCTATGATCTTTGCGAAACCGTCCATGAGGACACGAGTTTCATTTG
AGACTGGATTTTTCCTACTTGGAGGCCATGCTATATATTTAGGGCCTGATGATATCCAGATGGGTAAACGAGAGGAAACTCGTGATGTTGCTCGTGTTTT
GTCACGCTATAACGATATAATTATGGCACGTGTTTTTGCTCATCAGGACATTCTTGATCTGGCAAAACATGCAACAGTGCCTGTTATTAATGGCCTGACT
GACTATAACCATCCTTGCCAAATAATGGCTGATGCCCTCACCATAATTGAACATGTTGGCCGGTTGGAAGGAACTAAGGTTGTATATGTTGGGGATGGGA
ATAACATTGTACACTCTTGGCTGCTGTTGGCAGCTGTGATTCCTTTCCACTTTGTCTGTGCTTGCCCTAAAGGTTTTGAACCAGATGCAAAAACCGTACA
GAAGGCACAACAGGCTGGAATCAGCAAGATCGAGATTACTAATGACCCACAGGAAGCTGTTAGAGGAGCTGATGTGGTGTACTCTGATGTGTGGGCCAGC
ATGGGGCAAAAGGAAGAGGCTGCACACCGTCGCCAAGTATTTCAAGGATTTCAGGTGGACGAAAATCTGATGAAGTTGGCTGGCCCAAAAGCTTATTTCA
TGCATTGTTTACCAGCTGAAAGGGGTGTGGAGGTTACTGATGGTGTCATTGAAGCTCCGAACTCCATAGTCTTTCCACAAGCTGAGAATCGCATGCATGC
ACAGAATGCTATAATGTTACACGCGCTTGGTTTGTAA
AA sequence
>Potri.005G229400.1 pacid=42804394 polypeptide=Potri.005G229400.1.p locus=Potri.005G229400 ID=Potri.005G229400.1.v4.1 annot-version=v4.1
MAAISCHCAVPSKKVSLSSSSSALSTTPLSRCSRFSAVSVPSRASRGRISCQISSSSATSPPPPSSVNGPAKAGMEDFLHISDFDKATIMKILDRAAEVK
AVIKSGDRTFLPFKGKTMAMIFAKPSMRTRVSFETGFFLLGGHAIYLGPDDIQMGKREETRDVARVLSRYNDIIMARVFAHQDILDLAKHATVPVINGLT
DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLLAAVIPFHFVCACPKGFEPDAKTVQKAQQAGISKIEITNDPQEAVRGADVVYSDVWAS
MGQKEEAAHRRQVFQGFQVDENLMKLAGPKAYFMHCLPAERGVEVTDGVIEAPNSIVFPQAENRMHAQNAIMLHALGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G75330 OTC ornithine carbamoyltransferase... Potri.005G229400
[exp]
0 1
AT4G20440 SMB small nuclear ribonucleoprotei... Potri.011G155700
[exp]
4.58 0.8507
AT3G27740 VEN6, CARA VENOSA 6, carbamoyl phosphate ... Potri.003G080900
[exp]
4.69 0.8591 Pt-CARA.2
AT3G20330 PYRB PYRIMIDINE B (.1) Potri.001G357200
[exp]
7.07 0.8661
AT4G21720 unknown protein Potri.004G041700
[exp]
7.93 0.8248
AT4G39300 unknown protein Potri.004G154800
[exp]
7.93 0.8191
AT3G15355 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGAT... Potri.008G104400
[exp]
9.89 0.7964
AT5G45330 DCP5-L decapping 5-like (.1) Potri.004G235100
[exp]
11.57 0.7422
AT5G64670 Ribosomal protein L18e/L15 sup... Potri.001G324300
[exp]
13.78 0.8394
AT4G22930 PYR4, DHOASE DIHYDROOROTASE, pyrimidin 4 (.... Potri.007G139700
[exp]
15.19 0.8112
AT5G38890 Nucleic acid-binding, OB-fold-... Potri.013G050400
[exp]
22.73 0.7549

Potri.005G229400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.