Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66460 543 / 0 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT3G10890 454 / 1e-158 Glycosyl hydrolase superfamily protein (.1) AT3G10900 420 / 2e-145 Glycosyl hydrolase superfamily protein (.1) AT1G02310 388 / 6e-133 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT5G01930 389 / 7e-133 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT2G20680 369 / 4e-125 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT4G28320 358 / 4e-121 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT3G30540 316 / 7e-106 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120500 [exp] 552 / 0 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 552 / 0 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 440 / 3e-153 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 407 / 1e-139 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 400 / 2e-136 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.013G130400 [exp] 374 / 6e-127 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 369 / 2e-124 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 298 / 2e-98 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 207 / 1e-64 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014288 [exp] 548 / 0 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 547 / 0 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10030347 [exp] 441 / 9e-153 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007900 [exp] 437 / 4e-151 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007210 [exp] 409 / 3e-141 AT5G66460 401 / 5e-138 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007211 [exp] 411 / 2e-136 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 399 / 2e-136 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 365 / 2e-123 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10039833 [exp] 363 / 5e-123 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 363 / 7e-123 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00150 [poplar] [flax] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Potri.005G229600.2 pacid=42803575 polypeptide=Potri.005G229600.2.p locus=Potri.005G229600 ID=Potri.005G229600.2.v4.1 annot-version=v4.1 ATGAGGCACTGGGGTCTAATTTTCTTAGTGATTCTGCTCATTCAAGAACAGGGAATTTTTCTCCAGGTGGAAGCAGATGATGGGTTCATAAGAACCAAAG GAGTGCAATTCTTGTTGAATGGGAGCCCGTTTTATGCAAATGGCTTCAATGGCTACTGGCTCATGTACTTTGCAACAGATACTTCACAGAGAGACAAAGT GACATCTGTTTTCCAAGATGCTAAACAGCATGGCCTTACACTGGCAAGAACTTGGGCTTTCAATGATGGTCAAGATAGAGCTCTACAGGTCTCACCTGGC CACTACAATGAACAAACTTTCCAGGGATTGGATTTTGTCATTTCCGAAGCTAAGAAGAATGGGATTAAGCTGATTTTGAGCTTGGTGAACAACTATGAGA ACTTTGGAGGGAGAAAACAGTATGTGAACTGGGCATCCAGTCAAGGCCAGTCCATATCATCTCTTGATGATTTCTATACAAACTCTGTAGTGAAAGGATA CTACAAGAATCATATCAAGACTGTTCTGACAAGACGTAACAGTATCACCGGAGTTGCTTACAAAGATGAGCCAACGATAATGGCTTGGGAGCTTATGAAT GAACCCAGATGTGCCTCAGATCCATCAGGAAGGACCATTCAGGCTTGGATTACAGAGATGGCTTCTTACTTGAAATCCATAGATGGAAATCACTTGTTAG AAGTAGGCTTGGAAGGGTTTTATGGACCATCTTCTTCTGAAAAGCAGCAATCCAATCCAAACTTTCAAGTAGGGACAGATTTCATTGCTAACAATCAGAT ACCTGACATTGACTTTGCCACAGTTCACTCCTATCCTGACCAATGGTTGCCTGATTCAAGTGAAGAAAGCCAAGAATCGTTTTTGAACAGTTGGCTCAAC AATCATATCCAAGATTCACAGAACATTCTTCGGAAGCCAGTTCTGTTCGCTGAATTTGGAAAATCATTGAGAACGTCGAATGATAATCAAAGGGACCGGC TGTTCAATACAGTCTACTCGGCTATTTATTCATCAGCAAGCAGTGGAGGTGCTGCTGCAGGTGGAATGTTCTGGCAACTACTTACTGAAGGAATGGACTC ATTCCGAGATGGGTATGAGGTAGTCTTCAGCCAGAATCCTTCGACAACTAGTGTCATTGTTGACCAGTCTCAAAAGCTCAATCGGATTCGAAAGATGTAT GCAAGGCTGAGGAACATTGAGAAGTGGAAGAGAGCAAAAGATATTCGAAACAATGGCAATTAA
AA sequence Show only first row Show all	>Potri.005G229600.2 pacid=42803575 polypeptide=Potri.005G229600.2.p locus=Potri.005G229600 ID=Potri.005G229600.2.v4.1 annot-version=v4.1 MRHWGLIFLVILLIQEQGIFLQVEADDGFIRTKGVQFLLNGSPFYANGFNGYWLMYFATDTSQRDKVTSVFQDAKQHGLTLARTWAFNDGQDRALQVSPG HYNEQTFQGLDFVISEAKKNGIKLILSLVNNYENFGGRKQYVNWASSQGQSISSLDDFYTNSVVKGYYKNHIKTVLTRRNSITGVAYKDEPTIMAWELMN EPRCASDPSGRTIQAWITEMASYLKSIDGNHLLEVGLEGFYGPSSSEKQQSNPNFQVGTDFIANNQIPDIDFATVHSYPDQWLPDSSEESQESFLNSWLN NHIQDSQNILRKPVLFAEFGKSLRTSNDNQRDRLFNTVYSAIYSSASSGGAAAGGMFWQLLTEGMDSFRDGYEVVFSQNPSTTSVIVDQSQKLNRIRKMY ARLRNIEKWKRAKDIRNNGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.005G229600 [exp]	0	1
AT3G03770			Leucine-rich repeat protein ki...		Potri.008G014300 [exp]	2.82	0.6918
AT3G61490			Pectin lyase-like superfamily ...		Potri.002G162400 [exp]	5.19	0.6672
AT1G48100			Pectin lyase-like superfamily ...		Potri.010G152000 [exp]	7.21	0.6572
AT1G14890			Plant invertase/pectin methyle...		Potri.008G132600 [exp]	14.69	0.6695
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Potri.009G123900 [exp]	14.69	0.6208
AT5G07240		IQD24	IQ-domain 24 (.1)		Potri.015G142200 [exp]	18.52	0.6299
AT3G05936			unknown protein		Potri.005G000800 [exp]	25.09	0.6314
AT1G48100			Pectin lyase-like superfamily ...		Potri.008G100500 [exp]	28.46	0.5730
AT3G17130			Plant invertase/pectin methyle...		Potri.008G102600 [exp]	35.49	0.5978
AT4G39900			unknown protein		Potri.007G093200 [exp]	36.19	0.6496

Compare expression of checked genes

Potri.005G229600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.