Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66440 63 / 2e-11 unknown protein AT1G75360 55 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G033100 [exp] 378 / 5e-133 AT5G66440 78 / 1e-16 unknown protein Potri.007G021500 [exp] 51 / 2e-07 AT5G66440 147 / 6e-43 unknown protein Potri.005G120300 [exp] 46 / 1e-05 AT5G66440 134 / 4e-38 unknown protein Potri.009G119000 [exp] 45 / 2e-05 AT4G34560 90 / 8e-22 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024273 [exp] 109 / 2e-28 AT5G66440 86 / 1e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G229800.1 pacid=42805655 polypeptide=Potri.005G229800.1.p locus=Potri.005G229800 ID=Potri.005G229800.1.v4.1 annot-version=v4.1 ATGTCTAGTTCCTTTGAAATATTTGACAAAGTGAAGGCTGGGAAAGCCGATGCTATGAGAAGGTACAACAGAAAGAGAAACCTTTACTGCTTCTTGGAAA CTGTGGGAGCTTTAGTCTTGCTTTGGTGCTCCTTCTCTTGCTTCCCTGTCATAACACATGCAGCCTCTCGTTATCTCTCCTTTTTTAACCAGAAAATCTA TGCTTTTGTGCTTGCAAACGTTTTTATTCTAATCGTCGTCTACCTTTCATCTACAACACCCAGCAACAATGACCAAAGCGACACTCCAATCCAAACCGAT ATCTATGACGAGTACGTTTCCTTCTCCACCTCCTCTCCTCGGTGGAAAACAACCACCGGAGAGGACAAACAGTTTGTTGTTTCCTTGCTGCAAGAGGAAC CAGTTCAAGCAGAAGAGAAGAATCCAGTTCGTGAGAAAGATACACTCGACGACGAAAAACAAATTGTTTGCTGCGAGAAAACTAACGATGCTGCCAATGT TGATGAAATGGGAAAAAATCCGGTTCGTGATCTTACAGTGGTGAAAGAGGAGAAGTTTTTCAGGAGGACGCTATCAGAGAAACATGGGAAAGAGAAAAGG GAATATCCACGAGAGTTTCGAAGATCGGAGACGGAGATTGGAAGGGAGACGTTGACTGTATTCCGTACTGGTGGCCTTAATTATGATACTCCGGGGGCCG CGAGAAAGTCGATGCTGGAGATGAATAGTGACGAGTTTAGGCTTACAATTGAGAGATTTATTGCTACTAAGAAGAAGATTTTGAGAGAGGAAAGTATTGC TTTGTCAAGTGAGGAAAAGGAAGAATATTTAGCTATTAATTATAGATAA
AA sequence Show only first row Show all	>Potri.005G229800.1 pacid=42805655 polypeptide=Potri.005G229800.1.p locus=Potri.005G229800 ID=Potri.005G229800.1.v4.1 annot-version=v4.1 MSSSFEIFDKVKAGKADAMRRYNRKRNLYCFLETVGALVLLWCSFSCFPVITHAASRYLSFFNQKIYAFVLANVFILIVVYLSSTTPSNNDQSDTPIQTD IYDEYVSFSTSSPRWKTTTGEDKQFVVSLLQEEPVQAEEKNPVREKDTLDDEKQIVCCEKTNDAANVDEMGKNPVRDLTVVKEEKFFRRTLSEKHGKEKR EYPREFRRSETEIGRETLTVFRTGGLNYDTPGAARKSMLEMNSDEFRLTIERFIATKKKILREESIALSSEEKEEYLAINYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66440			unknown protein		Potri.005G229800 [exp]	0	1
AT2G48140		EDA4	embryo sac development arrest ...		Potri.008G155200 [exp]	1.00	0.9540
					Potri.017G080900 [exp]	5.47	0.9287
					Potri.010G196500 [exp]	7.21	0.8611
AT2G38870			Serine protease inhibitor, pot...		Potri.002G042300 [exp]	7.48	0.9011
AT2G38905			Low temperature and salt respo...		Potri.010G217200 [exp]	7.74	0.8955
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Potri.007G111500 [exp]	9.16	0.8885
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Potri.017G099500 [exp]	10.67	0.9093
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.003G083200 [exp]	10.95	0.9161	PtrEXLB1,EXLB1.1
AT1G56600		ATGOLS2	galactinol synthase 2 (.1)		Potri.005G006800 [exp]	11.40	0.9096
AT2G42560			late embryogenesis abundant do...		Potri.019G090300 [exp]	12.16	0.9134

Compare expression of checked genes

Potri.005G229800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.