Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	JMT.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19640 389 / 1e-134 JMT jasmonic acid carboxyl methyltransferase (.1) AT4G36470 270 / 5e-88 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G66430 256 / 8e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04380 251 / 2e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G11480 246 / 9e-79 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38020 237 / 4e-75 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 228 / 3e-71 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G21950 225 / 1e-70 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G14060 199 / 1e-60 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G68040 172 / 2e-50 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021300 [exp] 356 / 1e-121 AT3G11480 318 / 1e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022002 [exp] 333 / 7e-113 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G045900 [exp] 330 / 2e-111 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022400 [exp] 323 / 1e-108 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022000 [exp] 317 / 2e-106 AT3G11480 300 / 7e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022402 [exp] 294 / 2e-97 AT3G11480 261 / 1e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G021400 [exp] 285 / 7e-94 AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022200 [exp] 209 / 4e-65 AT5G04370 227 / 1e-71 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.012G049900 [exp] 189 / 1e-56 AT1G15125 309 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024271 [exp] 337 / 3e-114 AT1G19640 315 / 2e-105 jasmonic acid carboxyl methyltransferase (.1) Lus10025993 [exp] 285 / 1e-92 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041380 [exp] 265 / 3e-86 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041776 [exp] 264 / 2e-85 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 245 / 3e-78 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 250 / 2e-77 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 233 / 5e-73 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 231 / 5e-73 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10043177 [exp] 166 / 8e-48 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10032569 [exp] 129 / 3e-34 AT5G55250 400 / 2e-139 IAA carboxylmethyltransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03492 [poplar] [flax] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G230100.1 pacid=42803072 polypeptide=Potri.005G230100.1.p locus=Potri.005G230100 ID=Potri.005G230100.1.v4.1 annot-version=v4.1 ATGGAAGTAATGCAAGTGCTTCACATGAACAAAGGAGATGATGAAAATAGTTATGCAAAAAACTCGAAAGTGCAGAGCAAGATAATATCTCTAGGAAAGC GAATCAATGAGGAGGCTATAATGCAAATGTTGTGCAGCAATATCCCTGACATCATGGGTATTGCAGACCTGGGTTGCTCCTCTGGACCTAACTCGTTGTC AGTGATCTCCGAAATTACTGATATCATCTATGCCAAATGCAGAGAGTTGGGGCGTCCAACACCAGAACTTAAGGTCTTCCTGAATGATCTTCCTCATAAT GACTTCAATTTTATTTTTGGATCCTTGCCAGCATTCTATGATAAATTAAAGAAAGAAAAGGGTTCCGACTTCGGGCCATGCTTTGTATCAGCAACGCCGG GTTCTTTCTATGGTAGATTGTTTCCTAGCAGGAGCTTGCATTGTGTGCACTCTTCTTCTAGTCTTCACTGGCTCTCGCAGGTTCCAGCTGGTCTAGAGAG CAACGCGAGGACGGCCATGAACAAGGGAAAGATTTATATATCAAAGTCAAGCTCGCTTTGTGTGTTAGAAGCATATTCATTGCAGTTTCAAAAAGACTTT TCGTCGTTTCTAAAATCACGTTCGAAGGAAATTGTTCCCGGAGGCTGCATGCTCTTGTCATTCATGGGCAGGAGATCTACCGATCCCACCACGGACGAGA GTTGCTACCATTGGGAGCTCTTAGCACAGGCACTAATGAGCATGGTTTCTGAGGGGCTCGTCGAGAAAGAAAAGGTCGATTCCTTTAACGCCCCCTACTA TGGTCCATGTGTGGAAGAAATGAGGTTAGAGATTGAAAAGGATGGTTCTTTCAGTGTCAATCGGCTCGAGACCTTTGAAATTGACTGGGATGGAGGTGTC GACGATGTGGACACCACGTCTGGGGCAGCATTACGTGGACAGAGAGTGGCCAAGACAATCAGAGCTGTCGTGGAGTCGATGCTGGAATCTCATTTTGGGA AGGACATAATGGACGAATTATTTCGAAGGTATGGAGAGATGGTGGAGGGTTACTTGTCAAAGACCGGAACCAAGTACACCAACTTGGTCATTTCAATGGT TAGAAATTAA
AA sequence Show only first row Show all	>Potri.005G230100.1 pacid=42803072 polypeptide=Potri.005G230100.1.p locus=Potri.005G230100 ID=Potri.005G230100.1.v4.1 annot-version=v4.1 MEVMQVLHMNKGDDENSYAKNSKVQSKIISLGKRINEEAIMQMLCSNIPDIMGIADLGCSSGPNSLSVISEITDIIYAKCRELGRPTPELKVFLNDLPHN DFNFIFGSLPAFYDKLKKEKGSDFGPCFVSATPGSFYGRLFPSRSLHCVHSSSSLHWLSQVPAGLESNARTAMNKGKIYISKSSSLCVLEAYSLQFQKDF SSFLKSRSKEIVPGGCMLLSFMGRRSTDPTTDESCYHWELLAQALMSMVSEGLVEKEKVDSFNAPYYGPCVEEMRLEIEKDGSFSVNRLETFEIDWDGGV DDVDTTSGAALRGQRVAKTIRAVVESMLESHFGKDIMDELFRRYGEMVEGYLSKTGTKYTNLVISMVRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Potri.005G230100 [exp]	0	1	JMT.1
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.009G043800 [exp]	6.00	0.9149
AT1G23200			Plant invertase/pectin methyle...		Potri.010G109400 [exp]	9.79	0.9107	PE6.1
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033600 [exp]	10.53	0.9109
AT5G61520			Major facilitator superfamily ...		Potri.004G233700 [exp]	10.81	0.8940
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.011G142800 [exp]	13.78	0.8806	Pt-TPS1.6
AT1G30860			RING/U-box superfamily protein...		Potri.001G074800 [exp]	22.13	0.8937
AT1G54570			Esterase/lipase/thioesterase f...		Potri.005G046700 [exp]	22.97	0.8911
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033300 [exp]	24.67	0.9073
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Potri.001G436300 [exp]	28.19	0.9079
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Potri.014G149700 [exp]	32.63	0.8458

Compare expression of checked genes

Potri.005G230100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.