Plant FIBer expression Database

Potri.005G230200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42810 508 / 2e-178 ATIPK1 inositol-pentakisphosphate 2-kinase 1 (.1)
AT1G22100 504 / 4e-177 Inositol-pentakisphosphate 2-kinase family protein (.1)
AT1G58643 446 / 9e-154 Inositol-pentakisphosphate 2-kinase family protein (.1)
AT1G59312 446 / 9e-154 Inositol-pentakisphosphate 2-kinase family protein (.1)
AT1G58936 446 / 9e-154 Inositol-pentakisphosphate 2-kinase family protein (.1)
AT1G59171 54 / 2e-09 Inositol-pentakisphosphate 2-kinase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G032900
[exp]
746 / 0 AT5G42810 494 / 2e-173 inositol-pentakisphosphate 2-kinase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024274
[exp]
589 / 0 AT1G22100 521 / 0.0 Inositol-pentakisphosphate 2-kinase family protein (.1)
Lus10010640
[exp]
551 / 0 AT1G22100 491 / 3e-172 Inositol-pentakisphosphate 2-kinase family protein (.1)
Lus10033202
[exp]
59 / 3e-11 AT1G59171 81 / 6e-22 Inositol-pentakisphosphate 2-kinase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF06090 Ins_P5_2-kin Inositol-pentakisphosphate 2-kinase
Representative CDS sequence
>Potri.005G230200.2 pacid=42803165 polypeptide=Potri.005G230200.2.p locus=Potri.005G230200 ID=Potri.005G230200.2.v4.1 annot-version=v4.1
ATGCTATCAGCAGGAACGGTATTTTCTATCCATTTGAATCATTCTCTGCGATTCTTCCGAATTTATCTCAGTTTGGACGTTAGCCTGTTAGGGTTGAATT
ATCATCAACACTTTGCAGCAACAGCAGATATTTTCCTCTCATTTTCTGTAATGGAGGTCAAACTAGAGCGAAAGGACGCAGCTGATTGGTCGTACAGAGG
TGAAGGTGCTGCTAATATTGTCCTCGCTTACACTGGATCATCTCCCGCTTTTATTGGGAAAGTAACGAGGATAGCAAAAAAAGAAAGGAACGGGTCACCG
AAGTGTGACTCTAACCAATCAGTATTAACAGAGGAAGAACGGTTGTTATGGAGAGACGTGCAAGAGTTGGTTGCCTCTCCTACGAAAGAAATTGCAGAGC
AGATTTATACTCAGCTAGTCATGAGTCCTCTGTTAGGTCCCAAACATGTCGATGCCGGGATGCGTGTGCCAGTGGCAAGGGAATTTCTTGAGTGTGTTGA
AAAGAATGTAATTAAGCAGCGTCCGCCTTGGCGAGTTGATGTTTCCACGTTTGATATGGAACGCGATTCTGTGATTATAATGTCTGATCATTCTCTATTT
CCTGGAGGTGTTCTTGGAGATGGATCTTGCATATCAGTTGAGATAAAGCCCAAATGTGGATTTCTTCCTTTATCAAAATTCATGGCTGAAGGAAATTCTG
TTAAAAGGAGCACTACTCGTTTTCGAATGCACCAAATCCTGAAGTTGCGTGAACAAGAGATATCAGAGTTAAGTGAGTATGATCCTCTGGATCTGTTTTC
TGGTTCCAAGGAAAGAATACATAAAGCCATCAAGGATCTGTACAACACTCCTCAGAACAATTTCCGTGTATTCTTGAATGGTTCTCTTATATTTGGGGGC
TCGGGTGGTGGCACAGAGAAAACTAATGCTGTGGTTGGAAAAGCTTTTGAAGACATGCTTGAGGGCATCATCCAGGCAGAAGATGGCTTGCGCACGATGA
GTTTTATACAGCTTGTTGGTGAGACAGTTTACTGCTCTAGAGTGCTGGATGAGCTTCTTGAAGTTCAAAAGTTTGACAATTTTGACATTGAAGGGGCCAT
CCATGCGTATTACAACATTGTTTCTCAGCCTTGTGCAGTATGCCAACAGTTGGATGAAGCAGGACTACCACATAGATGTTCCTCTTTGCATTCCATTCAT
ATGGATGAGAGTTTGAAGATTGTGAAAGATTATCTGATAGCTGCTACTGCAAAGGACTGTAGTTTGATGATCAGTTTTAGACCAACAGAAGACGGGGAGT
TTGGATCTCCATATAGTCATGTATACCTACAATCAACTAACCAAAGTTTTAATTACAAGGTGAACTTCATTGACTTGGATTTGAGACCTTTAAAGAAGAT
GGAAGACTATTATGAATTGGACAAGAAGATATTGAACAGCTACTCTCGAATTTTGTAA
AA sequence
>Potri.005G230200.2 pacid=42803165 polypeptide=Potri.005G230200.2.p locus=Potri.005G230200 ID=Potri.005G230200.2.v4.1 annot-version=v4.1
MLSAGTVFSIHLNHSLRFFRIYLSLDVSLLGLNYHQHFAATADIFLSFSVMEVKLERKDAADWSYRGEGAANIVLAYTGSSPAFIGKVTRIAKKERNGSP
KCDSNQSVLTEEERLLWRDVQELVASPTKEIAEQIYTQLVMSPLLGPKHVDAGMRVPVAREFLECVEKNVIKQRPPWRVDVSTFDMERDSVIIMSDHSLF
PGGVLGDGSCISVEIKPKCGFLPLSKFMAEGNSVKRSTTRFRMHQILKLREQEISELSEYDPLDLFSGSKERIHKAIKDLYNTPQNNFRVFLNGSLIFGG
SGGGTEKTNAVVGKAFEDMLEGIIQAEDGLRTMSFIQLVGETVYCSRVLDELLEVQKFDNFDIEGAIHAYYNIVSQPCAVCQQLDEAGLPHRCSSLHSIH
MDESLKIVKDYLIAATAKDCSLMISFRPTEDGEFGSPYSHVYLQSTNQSFNYKVNFIDLDLRPLKKMEDYYELDKKILNSYSRIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G42810 ATIPK1 inositol-pentakisphosphate 2-k... Potri.005G230200
[exp]
0 1
AT1G70880 Polyketide cyclase/dehydrase a... Potri.004G020000
[exp]
2.00 0.8849
Potri.014G030700
[exp]
3.00 0.8865
AT4G25970 PSD3, PSD2 phosphatidylserine decarboxyla... Potri.002G127000
[exp]
5.19 0.8723
AT1G10155 ATPP2-A10 phloem protein 2-A10 (.1) Potri.015G120100
[exp]
12.00 0.8317
AT1G73040 Mannose-binding lectin superfa... Potri.012G140001
[exp]
17.94 0.8197
AT1G70880 Polyketide cyclase/dehydrase a... Potri.004G020100
[exp]
20.32 0.8320
AT5G06800 GARP myb-like HTH transcriptional r... Potri.006G191000
[exp]
22.97 0.8189
AT1G24620 EF hand calcium-binding protei... Potri.002G088500
[exp]
29.93 0.8440
AT1G53160 SBP SPL4 squamosa promoter binding prot... Potri.004G046700
[exp]
30.00 0.7925
AT4G31240 protein kinase C-like zinc fin... Potri.006G279400
[exp]
32.40 0.8032

Potri.005G230200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.