Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16370 304 / 1e-100 THY-1 thymidylate synthase 1 (.1) AT4G34570 297 / 1e-97 THY-2 thymidylate synthase 2 (.1) AT2G21550 258 / 2e-83 Bifunctional dihydrofolate reductase/thymidylate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G230700 [exp] 551 / 0 AT2G16370 299 / 8e-99 thymidylate synthase 1 (.1) Potri.004G157400 [exp] 336 / 3e-113 AT2G16370 870 / 0.0 thymidylate synthase 1 (.1) Potri.009G119200 [exp] 326 / 4e-109 AT2G16370 845 / 0.0 thymidylate synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040434 [exp] 324 / 2e-108 AT2G16370 799 / 0.0 thymidylate synthase 1 (.1) Lus10023549 [exp] 127 / 5e-37 AT2G16370 131 / 2e-37 thymidylate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0387 [poplar] [flax] DHFred PF00186 [poplar] [flax] DHFR_1 Dihydrofolate reductase
Representative CDS sequence Show only first row Show all	>Potri.005G230400.4 pacid=42803961 polypeptide=Potri.005G230400.4.p locus=Potri.005G230400 ID=Potri.005G230400.4.v4.1 annot-version=v4.1 ATGAAACCTGCAATCTCTTCGGTTTTACTGAATTCTAGCAAAACTAGCTTCTGCAATTCAGCTTCTTTGGCTGCAACCTCACCGCTGTTTAAATTTCAAA TCTTAACTTCAAATTACAGACGATTTACTGCTATAGCGGGTGAGATTCCAATGAGGAGTTACCAAGTTGTGGTGGCTGCTACTCGAGATATGGGGATTGG AAAGGATGGAAAGTTACCTTGGAGATTGCCTTGTGATCTCAAGTTTTTCAAGGAGATTACACTGGCCACATCGGATCCTGGGAAACAAAATGCAATTTTG ATGGGTAGGAAAACATGGGAAAGTATTCCTATCAAGTACCGACCTCTTCCGGGTCGATTGAATGTGGTCCTGACTCGGAGTTTTGAGATTGAAGATGAAG AAAATGTTATTACATGTGGGAGCATTTCCTCAGCTTTGGAATTGTTAGCTGAAGCTCCCTATTGTTTCTCAATTGATAAGGTTTTTGTCATAGGAGGTGG CCAGATATTGAGGGAAACACTTAATGGTCCAGGATGTGATGCCATCCATGTTACGGAGATTGAGACGAGTGTTGAATGTGATACGTTCATTCCAAGTATT GATTTTTCTAAGTTTCAGCCTTGGTATTCGTCTCCACCATTGGTTGAAAATGGCATTCGATATTCTTTTGTAACTTATGTTCATGTGAGGAACTCTGAGA ATGAAACTATTGCTGGAAAGACTGGTGGAAAGTGTAATGACGGTAAATCGAATTCTAATAGGTTTGAGGTAAAGGATTTCTCATTTCTTCCGAAGATGAT TTTTGAGAAACGTGATGAGTACATGCATCATACAAGCAGTACAAAATAG
AA sequence Show only first row Show all	>Potri.005G230400.4 pacid=42803961 polypeptide=Potri.005G230400.4.p locus=Potri.005G230400 ID=Potri.005G230400.4.v4.1 annot-version=v4.1 MKPAISSVLLNSSKTSFCNSASLAATSPLFKFQILTSNYRRFTAIAGEIPMRSYQVVVAATRDMGIGKDGKLPWRLPCDLKFFKEITLATSDPGKQNAIL MGRKTWESIPIKYRPLPGRLNVVLTRSFEIEDEENVITCGSISSALELLAEAPYCFSIDKVFVIGGGQILRETLNGPGCDAIHVTEIETSVECDTFIPSI DFSKFQPWYSSPPLVENGIRYSFVTYVHVRNSENETIAGKTGGKCNDGKSNSNRFEVKDFSFLPKMIFEKRDEYMHHTSSTK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.005G230400 [exp]	0	1
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Potri.001G056400 [exp]	3.87	0.8033
AT1G29370			Kinase-related protein of unkn...		Potri.005G202851 [exp]	6.63	0.8276
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.007G137900 [exp]	11.48	0.7501
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Potri.004G128701 [exp]	12.24	0.7994
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099302 [exp]	16.12	0.7837
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.005G100200 [exp]	16.37	0.6798
AT1G13570			F-box/RNI-like superfamily pro...		Potri.008G110400 [exp]	18.43	0.7622
AT4G34100			RING/U-box superfamily protein...		Potri.009G099400 [exp]	20.19	0.7320
AT5G24450			Transcription factor IIIC, sub...		Potri.007G145000 [exp]	22.24	0.7850
AT3G52260			Pseudouridine synthase family ...		Potri.008G042000 [exp]	22.84	0.7392

Compare expression of checked genes

Potri.005G230400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.