Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21520 756 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 739 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 695 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 654 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 525 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 503 / 9e-173 ATSFH3 SEC14-like 3 (.1.2.3) AT4G34580 481 / 7e-164 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 473 / 6e-161 ATSFH12 SEC14-like 12 (.1) AT4G39180 456 / 3e-154 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G24840 453 / 8e-153 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G032600 [exp] 1031 / 0 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 802 / 0 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119500 [exp] 791 / 0 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119400 [exp] 546 / 0 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157600 [exp] 536 / 0 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.005G119700 [exp] 531 / 0 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 525 / 0 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.002G243000 [exp] 451 / 4e-151 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.011G168300 [exp] 439 / 8e-147 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026356 [exp] 733 / 0 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 717 / 0 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 712 / 0 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023546 [exp] 706 / 0 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10024276 [exp] 572 / 0 AT2G21520 602 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10025988 [exp] 521 / 6e-179 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 498 / 8e-171 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040432 [exp] 493 / 1e-167 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10028332 [exp] 491 / 2e-167 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10023547 [exp] 490 / 3e-167 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G230500.8 pacid=42803762 polypeptide=Potri.005G230500.8.p locus=Potri.005G230500 ID=Potri.005G230500.8.v4.1 annot-version=v4.1 ATGTCGAGTCCGTTGGATCTCTTAGCTCGGCCTTGCTTTGAGGGATTCTCTAGTAATGATGAGAAAAGGGAGCGGAAATCGGATTTTGATAACTCGGAGG AAGATAGGAAGACTAGAATCGGGAGTTTGAAAAAGAAAGCCATAAAGGCATCTAGTAAATTCAGGCGTTCTCTCAAGAAGAGCAAGAAAAACAATGGCGG CAGTGGAGGTGTTGGTGGAGGGGTTTCTGCTGCAATTGAGGATGTTCGAGATGTCGAGGAGCTTCGGCTTGTAGATGCATTTAAACAGGCACTTATTTCG GAGGATTTGCTTCCTCCCAGGCATGATGATTATCACATGTTATTGAGGTTCTTAAAAGCAAGGAAGTTTGATGTCGAGAAAGCAAAACAGATGTGGGCCA ACATGCTACAGTGGAGGAAAGATTTCGGTACTGACACTATTTTGGAGGATTTTGAGTTCAGTGAGTTGAAAGAAGTTCGAAAGTACTACCCTCAGGGTTA TCATGGTGTAGATAAGGATGGCAGACCTGTTTACATCGAAAGACTAGGAAAAGTTGATTCCAGCAAACTTATGGAAGTGATCACTTTAGAAAGATATTTG AGATATCATGTGCAGGAGTTTGAAAGGACTTTTGCGATTAAGTTTCCAGCTTGCACCATTGCTGCAAAGAGACACATTGATTCAAGTACAACTATTTTGG ATGTGCAAGGAATTGGTTTGAAAAACTTCACCAAGTCTGCACGAGAACTCATCATTCAGCTTCAGAAGATTGATGGTGACAACTATCCTGAGACACTTTG CAGAATGTATGTCATTAACGCTGGTCCCGGTTTTAAGCTGCTTTGGAGAACAGTGAGATCTTTTATTGATTCCCACACAGCTTCCAAGATTCATGTTCTT GGTAACAAGTACCAGAACAAGTTACTTGAAATAATAGACTCAAGTGAGTTGCCCGAGTTTCTTGGGGGTAGCTGTACTTGTGCTGATCAGGGAGGTTGTA TGAGATCCGATAGGGGGCCATGGAAAGATCCAAACATTTTAAAGATGGTTCATAGTGGCGAAGCACTATATTCCAGACAAATAGTAACTATTTCAAATAG TGGGGGCAGGGTAATTGCTCTTGATAAGCCATTCTATCCAGTGAAGGTAAAAACAAGTGATACATCCACTGCAGAGTCAGGATCCGAAGTGGAAGATGTT GTCTCTCCTAAGCCAACCGGGAGCTATTTGCTGCCAAGGCTGGCTCCTGTCTCTGAAGAAGCCATGCTTGGATGTTTTATACAGGCCAGGATGGCTGGTA GGATGAGTACTGCCAGTGTCTCTGAATATGACGAATACATACCTATGATTGACAAGACGGTGGATGCTGAATTTCAAGATTTATGTACTTCCAGAGGCAC ACCTTCTCCGTTAAGTGTAGAGAAGACTTCCGAAGGGATCCCTGCTCGTGTCTGGGCTTTGCTTGTGGCCTTCTTCATAACCTTTCTTGCCTTCTTTCGT TCAATGGCATTTTGGAATACTAAGAAACACCCAGCATCTGATTCTGCCAGTGACATTACTGACCTGACTTTTGAAACAGCACCAAAGGAGGAATTCAGAC CCCCTTCTCCTGCTCCAGGGTTTACAGAGGCAGACCTTCTTTCATCTGTCATGAAAAGGCTGGGTGAACTTGAGGAGAAGGTTGGTACATTACAGACAAA GCCTTTTCAGATGCCTTGTGAAAAGGAGGAGCTGCTTAATGCTGCAGTTTATCGTGTGGATGCATTAGAAGCAGAGCTAATTGCAACGAAAAAGGCTTTG CACGAAGCTTTGATCAGGCTAGAAGAACTTCTTGCGTATGTAGATGGTCGCGAACAAGCAAGTTTTCAGAAAAAGAAGTTTTGCTGGTCAAGAGGTTTCT GTACAGGAGGAATATATTAG
AA sequence Show only first row Show all	>Potri.005G230500.8 pacid=42803762 polypeptide=Potri.005G230500.8.p locus=Potri.005G230500 ID=Potri.005G230500.8.v4.1 annot-version=v4.1 MSSPLDLLARPCFEGFSSNDEKRERKSDFDNSEEDRKTRIGSLKKKAIKASSKFRRSLKKSKKNNGGSGGVGGGVSAAIEDVRDVEELRLVDAFKQALIS EDLLPPRHDDYHMLLRFLKARKFDVEKAKQMWANMLQWRKDFGTDTILEDFEFSELKEVRKYYPQGYHGVDKDGRPVYIERLGKVDSSKLMEVITLERYL RYHVQEFERTFAIKFPACTIAAKRHIDSSTTILDVQGIGLKNFTKSARELIIQLQKIDGDNYPETLCRMYVINAGPGFKLLWRTVRSFIDSHTASKIHVL GNKYQNKLLEIIDSSELPEFLGGSCTCADQGGCMRSDRGPWKDPNILKMVHSGEALYSRQIVTISNSGGRVIALDKPFYPVKVKTSDTSTAESGSEVEDV VSPKPTGSYLLPRLAPVSEEAMLGCFIQARMAGRMSTASVSEYDEYIPMIDKTVDAEFQDLCTSRGTPSPLSVEKTSEGIPARVWALLVAFFITFLAFFR SMAFWNTKKHPASDSASDITDLTFETAPKEEFRPPSPAPGFTEADLLSSVMKRLGELEEKVGTLQTKPFQMPCEKEELLNAAVYRVDALEAELIATKKAL HEALIRLEELLAYVDGREQASFQKKKFCWSRGFCTGGIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.005G230500 [exp]	0	1
AT1G22930			T-complex protein 11 (.1.2)		Potri.004G217800 [exp]	1.73	0.7673
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128900 [exp]	2.00	0.7605
AT4G30600			signal recognition particle re...		Potri.018G105900 [exp]	3.46	0.7214
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Potri.012G119200 [exp]	4.89	0.7044
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.002G067400 [exp]	8.12	0.7099	Pt-GBF4.1
AT2G16485			nucleic acid binding;zinc ion ...		Potri.007G016000 [exp]	9.32	0.7247
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G355100 [exp]	10.48	0.6712
AT2G27950			Ring/U-Box superfamily protein...		Potri.004G217700 [exp]	16.12	0.6521
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G108500 [exp]	16.88	0.6616
AT5G20260			Exostosin family protein (.1)		Potri.018G125058 [exp]	17.54	0.6488

Compare expression of checked genes

Potri.005G230500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.