Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75380 463 / 3e-165 ATBBD1 bifunctional nuclease in basal defense response 1 (.1.2.3) AT1G19660 462 / 5e-165 Wound-responsive family protein (.1.2) AT5G66050 113 / 1e-29 Wound-responsive family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G032500 [exp] 589 / 0 AT1G75380 495 / 4e-178 bifunctional nuclease in basal defense response 1 (.1.2.3) Potri.005G105900 [exp] 128 / 2e-34 AT5G66050 283 / 7e-94 Wound-responsive family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024277 [exp] 505 / 0 AT1G75380 452 / 4e-161 bifunctional nuclease in basal defense response 1 (.1.2.3) Lus10007390 [exp] 452 / 7e-160 AT1G19660 412 / 3e-144 Wound-responsive family protein (.1.2) Lus10028398 [exp] 112 / 1e-28 AT5G66050 261 / 1e-85 Wound-responsive family protein (.1.2) Lus10041852 [exp] 111 / 5e-28 AT5G66050 261 / 2e-85 Wound-responsive family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02577 [poplar] [flax] DUF151 Domain of unknown function (DUF151)
Representative CDS sequence Show only first row Show all	>Potri.005G230600.3 pacid=42805647 polypeptide=Potri.005G230600.3.p locus=Potri.005G230600 ID=Potri.005G230600.3.v4.1 annot-version=v4.1 ATGGGGTCACTGCAAGGACCAGTAATTTATCCTGCTGTGCGTGCAAAACAAGCGGGAACTTACAGCTTCCCGATGACTGGTCCGTTGGTGAAGGGTTGGC TTATTAGAAGTGAATTGCGGGGATTTAAGGGCTTAAGTGGTTGCAAATCTAAGGTGGTTCTTACTTCTCGGCAACTAAAAGCGCGAAGATGCAGTGTAGT GCAGTGTAGTTTGAGCTCATCATCAGATGGTAATGGGAGTACAGCAGAGAATTTCAATGAAAATCATGGAGATTATGTCAACTCTAGTGTAGTTGAAGCT GTTGAGGTGAAGAGTGGATCGGATGGTTTTGTGATCAAAATGAGGGATGGGAGGCACTTACGATGTGTCCACAACAACCCTCAAGGTGGGCATCTACCAG ACAACGCTCCGCATCCAGCAATTGTATTGAAGATGGAAGACGGGACTGGTCTTCTTCTCCCAATTATTGTTTTGGAGATGCCAAGTGTGTTGCTCATGGC AGCAGTGCGCAATGTCCAAATTGCAAGGCCAACTATGTATCAAGTGGTGAAGGAGATGGTTGAAAAAATGGGTTACGAAGTCAAACTCGTAAGAGTTACT AAGAGAGTGCATGAAGCATACTTTGCTCAGTTGTACCTCACTAAGATTGGTAATGAAACAGAATGTGTCAGCTTTGATCTTCGTCCATCAGATGCTATCA ATATAGCAGTTAGATGCAAGGTTCCTATTCAAGTCAATAAATACCTGGCATACAGTGATGGGATGAGAGTCATTGAATCTGGAAAGCCAATTCAGTCCCA TGCTTCAAATGGCTTGTTATTCACTGAACTAGATCGGCCCACTGGTCAACCTTGTCTTGATACCAAGGAGTTTGATCTTGTGCGCAACATGTTGACTGCT GCCATTGAGGAGCGTTATGGAGATGCTGCTCAATGGAGAGACAAACTTGGTCAATTTCGAGCAAAGAGGAACTTGAAGAAATATACGTAA
AA sequence Show only first row Show all	>Potri.005G230600.3 pacid=42805647 polypeptide=Potri.005G230600.3.p locus=Potri.005G230600 ID=Potri.005G230600.3.v4.1 annot-version=v4.1 MGSLQGPVIYPAVRAKQAGTYSFPMTGPLVKGWLIRSELRGFKGLSGCKSKVVLTSRQLKARRCSVVQCSLSSSSDGNGSTAENFNENHGDYVNSSVVEA VEVKSGSDGFVIKMRDGRHLRCVHNNPQGGHLPDNAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTMYQVVKEMVEKMGYEVKLVRVT KRVHEAYFAQLYLTKIGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKPIQSHASNGLLFTELDRPTGQPCLDTKEFDLVRNMLTA AIEERYGDAAQWRDKLGQFRAKRNLKKYT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Potri.005G230600 [exp]	0	1
AT1G49380			cytochrome c biogenesis protei...		Potri.009G111692 [exp]	8.48	0.9372
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.001G249800 [exp]	10.09	0.9371
AT5G13730		SIGD, SIG4	sigma factor 4 (.1)		Potri.009G057200 [exp]	12.72	0.9315
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Potri.011G009600 [exp]	13.03	0.9322
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Potri.004G166600 [exp]	16.49	0.9180
AT1G03670			ankyrin repeat family protein ...		Potri.018G077766 [exp]	17.54	0.9315
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.018G102500 [exp]	17.54	0.9236
AT4G24090			unknown protein		Potri.001G084500 [exp]	17.88	0.9351
AT3G27180			S-adenosyl-L-methionine-depend...		Potri.001G331900 [exp]	19.79	0.9302
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Potri.010G135100 [exp]	21.16	0.9210

Compare expression of checked genes

Potri.005G230600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.