Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27660 247 / 3e-77 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 124 / 2e-31 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT3G20640 123 / 7e-31 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29100 118 / 3e-29 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 115 / 3e-29 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G05170 114 / 5e-29 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G21340 114 / 2e-28 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 114 / 3e-28 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G31730 105 / 5e-27 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 98 / 4e-24 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G032400 [exp] 647 / 0 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G020200 [exp] 179 / 5e-52 AT1G27660 155 / 8e-43 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G119601 [exp] 174 / 7e-50 AT1G27660 145 / 2e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G083700 [exp] 137 / 1e-36 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 135 / 2e-36 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 131 / 1e-34 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 133 / 3e-34 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 130 / 2e-33 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.001G410600 [exp] 127 / 4e-32 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010638 [exp] 202 / 3e-60 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033198 [exp] 151 / 1e-41 AT1G27660 131 / 2e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018400 [exp] 133 / 2e-35 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013874 [exp] 133 / 2e-35 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014279 [exp] 134 / 1e-33 AT5G44230 374 / 5e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007613 [exp] 127 / 4e-33 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10038550 [exp] 124 / 9e-31 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025987 [exp] 121 / 1e-30 AT1G27660 119 / 6e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023669 [exp] 121 / 2e-30 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10025599 [exp] 102 / 8e-26 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G230800.8 pacid=42805351 polypeptide=Potri.005G230800.8.p locus=Potri.005G230800 ID=Potri.005G230800.8.v4.1 annot-version=v4.1 ATGGAGTCTGCAAATCTCCATCACCAGCATCAGCTTCAAGACCAGTTTGTTGGGTCTTCTTCTTTAACTACTGCTACCCCATCTAGCTATGCAGAAGCTG GAAGCGCCCGTGCTTGGACCCAAACCATCACTTTGAATTCTGACAACTCAAATCCAAGCTATAATGGAGTAATCTTCAACCAAAGACAGAAAAATGAGAG TCCAATCTCTTCTCTCAATAGCACCATGTTTCAGGACCTAGGCTTTCATTACTGGAATAACAATGCTGGCAACTTCAGTAGCCATTCAGCTTATGACCTA CAACTTTCAAAAATCAAAGAAGGGCTCTCATCATCAGATTCCTTTCCCAAATTTACCGAGATGTTAAATAGCCCTTCAAGTACTATTGAAGATCCACATG TATCTTCATCGAGTTACATTAAAGATGAGCTGAAGGATCTGAGTCTTAGTGAAAAGCTCCTTCTCGAGACTATTTCATCCGGCTTTCCAATCAATGGCCA CGATCAGTTTTCACCCCGGCAGATTTCCTCTAGTCATCACAACTGTTCCAGCTTTGGAAGTGCTATACCCAGCAGAGGGAGCTTTAGTCAGATATATCCT AGTATAAATATTTCAAACTTGAATCAGCCATCTTCACCGCTGATCTCAGGTTCCTTCGACATGAACTTACAGGCCTTGGATCTCTTAACCTCTACTAGAT TTAGTGGAAGTTTTCCCCAACCAGCTTCTCTTGATCCTCTAGACATGTTCAAAGACAGTCTTTCTTTTGGTCTCGATAGTATTCAGCAATCAAATCAGAG GCCATCATGTAGCCCTAGTAAAATATCCTCCACCAATGAAATAACAGAGGCTAAAAGGCCCAACAACAGCATGATGGAGCCGAAGGCAACCCAAGCAGCT GCACCCAAGAAATCGAGACTTGAGTCACGCTCTCCCTGCCCTCCTTTTAAGGTTAGAAAAGAGAAATTAGGAGATAGAATTGCAGCTTTGCAGCAGTTAG TTGCACCCTTTGGCAAGACAGACACAGCATCTGTGCTGATGGAGGCTATCGGATACATCAAGTTCCTTCAAAACCAGGTCGAGACATTGAGTGTTCCATA TATGAAGTCATCCCGCAACAAGACCAGTAGAAGCATTCAAGCGGCATCAAATTCGGGGGGTGATCAAGAATCAAAGAGGGACCTAAGAAGCCGAGGACTC TGCCTGGTGCCACTATCTTGCATGTCTTACGTAACGACTGATGGTGGGGGTGGAGGCATCTGGCCACCACCTAATTTTGGTGGAGGGACATAA
AA sequence Show only first row Show all	>Potri.005G230800.8 pacid=42805351 polypeptide=Potri.005G230800.8.p locus=Potri.005G230800 ID=Potri.005G230800.8.v4.1 annot-version=v4.1 MESANLHHQHQLQDQFVGSSSLTTATPSSYAEAGSARAWTQTITLNSDNSNPSYNGVIFNQRQKNESPISSLNSTMFQDLGFHYWNNNAGNFSSHSAYDL QLSKIKEGLSSSDSFPKFTEMLNSPSSTIEDPHVSSSSYIKDELKDLSLSEKLLLETISSGFPINGHDQFSPRQISSSHHNCSSFGSAIPSRGSFSQIYP SINISNLNQPSSPLISGSFDMNLQALDLLTSTRFSGSFPQPASLDPLDMFKDSLSFGLDSIQQSNQRPSCSPSKISSTNEITEAKRPNNSMMEPKATQAA APKKSRLESRSPCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQNQVETLSVPYMKSSRNKTSRSIQAASNSGGDQESKRDLRSRGL CLVPLSCMSYVTTDGGGGGIWPPPNFGGGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.005G230800 [exp]	0	1
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.004G213300 [exp]	1.41	0.8356
AT2G26510		PDE135	pigment defective embryo 135, ...		Potri.014G035800 [exp]	3.46	0.7948	PDE135.1
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Potri.002G113300 [exp]	3.87	0.7712	KNAT1.1
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.007G102100 [exp]	4.00	0.7819
AT3G60670			PLATZ transcription factor fam...		Potri.002G144900 [exp]	4.58	0.7846
AT2G41370		BOP2	BLADE ON PETIOLE2, Ankyrin rep...		Potri.006G043400 [exp]	5.65	0.7712
AT5G59790			Domain of unknown function (DU...		Potri.010G209600 [exp]	6.00	0.7211
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.001G049100 [exp]	6.78	0.8103
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G074000 [exp]	11.40	0.7948
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.004G143700 [exp]	11.48	0.7436

Compare expression of checked genes

Potri.005G230800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.