Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37990 323 / 8e-110 ribosome biogenesis regulatory protein (RRS1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019422 [exp] 361 / 5e-124 AT2G37990 403 / 3e-141 ribosome biogenesis regulatory protein (RRS1) family protein (.1) Lus10043278 [exp] 332 / 6e-113 AT2G37990 373 / 9e-130 ribosome biogenesis regulatory protein (RRS1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04939 [poplar] [flax] RRS1 Ribosome biogenesis regulatory protein (RRS1)
Representative CDS sequence Show only first row Show all	>Potri.005G231000.4 pacid=42804090 polypeptide=Potri.005G231000.4.p locus=Potri.005G231000 ID=Potri.005G231000.4.v4.1 annot-version=v4.1 ATGGATACACAAAATGAGTACCAGGTTGACCTTGGAAATCTTATGGCTTTTGACCCCTTTCACCACTTTACCTCTATTCCTTCTGCTAGGGAGGAGTTAG TTGCAGAATGTCTAAGTAATGGCACTGAGCTAGTTCAAGCCATTGTCAGTGGTGTTTTCAACTTGCCTTCAACTGAAGATATAGACGGTCCTCTTGTCAA GTTGCCGCCTCCAACAACAAAACTGCCAAGGGAGAAGCCTCTGCCGAAGCCAAAACCTCCTACAAGATGGGAACAGTTTGCCAAAGCAAAAGGAATAAGG AACCGCAAAAAAGACAAGGTTGTTTGGGATGAACAAACTGGTACTTGGAAACGTCGTTATGGATATGATCGTGTCAATGATGATGCTGATGTTCCCATAA TTGAGGCCAAGATGACCGATGAGCCAGGAGTGGATCCTTTTGCCAAGAGAGTAGCAGAGAAGAAGGAAAGGGTTCAAAAAAACCAGAAGAATCAGTTGCA AAACTTGAAAACTGCCGCCAAAGCTGGTGCTTTGCCTAGCCATGTTCAGCTAGCTGCCACAGCCTTGCCTATAACTGGAACCCAGGCTGCAAAAAAGAAA TTTACCAAAGACGAGCTAGGAAATGTAGCTGGACTAGCTTCTACTGCGACTGCCAGTGGTGGAAAGTTTGACAAGAAGTTGCGAGGAGAAAAGCCTGTTA AAAATCAAGGAAAACATCGCAAGTTCCTACCAGTTGTAGAAGGTTCGGGGATTGGCAGTCAAGAAAAGGAGCAAACTGATAGAGTTCTAAGCAAACTAAT CTCATCGAATTCACATGAGATTCTTAATGTGGATAAGGCTGTTACCATGTACAATGTCAATAAGGAGAGAAAACGAAGGAATCAATATGGGAAGCCTTCT TCAACAAGGAAAGAGCAAGGGAAGTCTTCTTCAACAAGGAATGAGCAAGGGAAGTCTTCTTCAACGCCAAGCAAATTGAAACCAAATAACAAACCAATGA AGGCAAAGAGCTTTCCAAATAAAGGAAAGGGGAGTTTTTCGAAGAAAGGAAAGGGGAGTTTTTCGAAGAAAGGAAAGGCATAG
AA sequence Show only first row Show all	>Potri.005G231000.4 pacid=42804090 polypeptide=Potri.005G231000.4.p locus=Potri.005G231000 ID=Potri.005G231000.4.v4.1 annot-version=v4.1 MDTQNEYQVDLGNLMAFDPFHHFTSIPSAREELVAECLSNGTELVQAIVSGVFNLPSTEDIDGPLVKLPPPTTKLPREKPLPKPKPPTRWEQFAKAKGIR NRKKDKVVWDEQTGTWKRRYGYDRVNDDADVPIIEAKMTDEPGVDPFAKRVAEKKERVQKNQKNQLQNLKTAAKAGALPSHVQLAATALPITGTQAAKKK FTKDELGNVAGLASTATASGGKFDKKLRGEKPVKNQGKHRKFLPVVEGSGIGSQEKEQTDRVLSKLISSNSHEILNVDKAVTMYNVNKERKRRNQYGKPS STRKEQGKSSSTRNEQGKSSSTPSKLKPNNKPMKAKSFPNKGKGSFSKKGKGSFSKKGKA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37990			ribosome biogenesis regulatory...		Potri.005G231000 [exp]	0	1
AT3G22660			rRNA processing protein-relate...		Potri.015G131200 [exp]	1.00	0.8444
AT1G30880			unknown protein		Potri.003G155400 [exp]	2.00	0.8359
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Potri.017G101200 [exp]	3.46	0.8228
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.010G014600 [exp]	4.35	0.7806
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Potri.006G149400 [exp]	6.00	0.8022
AT5G36950		DEGP10	DegP protease 10 (.1)		Potri.008G079900 [exp]	6.32	0.8149
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Potri.005G152200 [exp]	6.70	0.8232
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.001G047400 [exp]	6.70	0.8314
AT3G58660			Ribosomal protein L1p/L10e fam...		Potri.012G145000 [exp]	9.16	0.8185
AT3G15080			Polynucleotidyl transferase, r...		Potri.001G373500 [exp]	9.48	0.7493

Compare expression of checked genes

Potri.005G231000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.