Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MPK1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59580 616 / 0 ATMPK2 mitogen-activated protein kinase homolog 2 (.1.2) AT1G10210 608 / 0 ATMPK1 mitogen-activated protein kinase 1 (.1.2) AT2G18170 603 / 0 ATMPK7 MAP kinase 7 (.1) AT4G36450 568 / 0 ATMPK14 mitogen-activated protein kinase 14 (.1) AT1G07880 392 / 6e-136 ATMPK13 Protein kinase superfamily protein (.1.2) AT3G45640 392 / 7e-136 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT4G01370 392 / 2e-135 ATMPK4 MAP kinase 4 (.1) AT4G11330 387 / 1e-133 ATMPK5 MAP kinase 5 (.1) AT2G43790 387 / 3e-133 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT1G01560 369 / 8e-127 ATMPK11 MAP kinase 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G032100 [exp] 671 / 0 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.005G119500 [exp] 584 / 0 AT2G18170 662 / 0.0 MAP kinase 7 (.1) Potri.007G020100 [exp] 578 / 0 AT2G18170 654 / 0.0 MAP kinase 7 (.1) Potri.007G139800 [exp] 400 / 2e-138 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.017G010200 [exp] 396 / 6e-137 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.009G066100 [exp] 394 / 2e-136 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.003G131800 [exp] 394 / 2e-136 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.002G162500 [exp] 391 / 3e-135 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 389 / 2e-134 AT4G01370 657 / 0.0 MAP kinase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033197 [exp] 643 / 0 AT1G10210 660 / 0.0 mitogen-activated protein kinase 1 (.1.2) Lus10010637 [exp] 638 / 0 AT1G59580 657 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Lus10025986 [exp] 550 / 0 AT2G18170 617 / 0.0 MAP kinase 7 (.1) Lus10014283 [exp] 550 / 0 AT2G18170 611 / 0.0 MAP kinase 7 (.1) Lus10028765 [exp] 396 / 5e-137 AT4G01370 630 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 396 / 5e-137 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10024668 [exp] 395 / 8e-137 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10007921 [exp] 395 / 1e-136 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10036136 [exp] 392 / 1e-135 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10018127 [exp] 392 / 2e-135 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF06293 [poplar] [flax] Kdo Lipopolysaccharide kinase (Kdo/WaaP) family
Representative CDS sequence Show only first row Show all	>Potri.005G231100.4 pacid=42802813 polypeptide=Potri.005G231100.4.p locus=Potri.005G231100 ID=Potri.005G231100.4.v4.1 annot-version=v4.1 ATGTTGCAGGGAATGGCAGCTCCAGTTGAGCCTCCAAATGGGGTTCGGATTCAGGGGAAGCATTACTATTCCATGTGGCAAACTTTGTTTGAGATTGACA CGAAATATGTGCCGATCAAGCCTATAGGTCGAGGGGCTTATGGTATTGTGTGCTCTTCTGTGAATAGAGAAACTAATGAGAAAGTTGCGATTAAAAAGAT ACACAATGCTTTCGAAAACCGTGTTGATGCGCTGAGAACTTTAAGGGAACTGAAGCTTCTTCGGCATCTTCGACATGAAAATGTGATTGCTTTGAAAGAT GTGATGATGCCTACCCAGAGAAGAAGCTTTAATGATGTTTATCTGGTTTATGAACTCATGGATACGGATCTGCATCAAATTATCAAGTCTTCTCAAGCAC TTTCTAATGATCACTGCCAATATTTCCTATTTCAGTTGCTACGTGGTCTGAAATATCTTCACTCAGCAAATATTCTCCATCGTGACTTGAAGCCTGGAAA CCTTCTCATCAATGCGAACTGTGACCTAAAAATCTGTGATTTTGGGCTGGCACGCACTAGCAATGGCAACAACCAGTTCATGACTGAGTATGTTGTCACT CGTTGGTATCGTGCTCCAGAGCTCCTTCTATGCTGTGATAATTATGGGACATCAATTGATGTCTGGTCTGTAGGATGCATCTTTGCAGAGCTTCTAGGTC GGAAGCCTATCTTCCCTGGCACAGAATGTCTCAATCAGCTTAAACTTATCATCAACATCCTCGGAAGTCAAAGTGAGGAGGATCTTGAATTTATTGATAA CATGAAGGCAAAGAAATATATCAAGTCACTTCCTTATTCACCTGGGACTCCCTTTTCCCACCTTTATCCTAATGCACATCCTTTGGCAATTGATCTGCTA CAAAAAATGCTTATTTTTGACCCATCAAAGAGGATCACTGTCACTGGAGCACTGGAACACCCTTACATGTCTCCACTATATGATCCCAGCTGCAACCCTC CAGCTCAGGTCCCAATTGATCTTGACATAGATGAGGAATTGGGGGAAGAAATGATACGAGAGATGATGTGGAAGGAGATGCTTCTTTACCATCCTGAGGC TGCAGCGGCCAATGGTGAGGTGTGTGCTCCTAATCTCGTCTGTTAA
AA sequence Show only first row Show all	>Potri.005G231100.4 pacid=42802813 polypeptide=Potri.005G231100.4.p locus=Potri.005G231100 ID=Potri.005G231100.4.v4.1 annot-version=v4.1 MLQGMAAPVEPPNGVRIQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKKIHNAFENRVDALRTLRELKLLRHLRHENVIALKD VMMPTQRRSFNDVYLVYELMDTDLHQIIKSSQALSNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTSNGNNQFMTEYVVT RWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQSEEDLEFIDNMKAKKYIKSLPYSPGTPFSHLYPNAHPLAIDLL QKMLIFDPSKRITVTGALEHPYMSPLYDPSCNPPAQVPIDLDIDEELGEEMIREMMWKEMLLYHPEAAAANGEVCAPNLVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59580		ATMPK2	mitogen-activated protein kina...		Potri.005G231100 [exp]	0	1	Pt-MPK1.3
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Potri.018G090700 [exp]	1.00	0.7956	Pt-HPT1.2
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Potri.005G099200 [exp]	8.94	0.7277
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059300 [exp]	20.49	0.7515
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.015G141800 [exp]	21.16	0.7536
AT2G03270			DNA-binding protein, putative ...		Potri.006G054600 [exp]	24.81	0.6497
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Potri.017G060000 [exp]	29.39	0.7232	SBP.2
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.001G012700 [exp]	31.49	0.7374	Pt-FAD2.1
AT3G14860			NHL domain-containing protein ...		Potri.001G387500 [exp]	32.31	0.7448
AT2G37050			Leucine-rich repeat protein ki...		Potri.016G084900 [exp]	38.34	0.6812
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Potri.006G129300 [exp]	39.08	0.7536

Compare expression of checked genes

Potri.005G231100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.