Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04940 360 / 2e-126 AtTic20-I, atTIC20, TIC20 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) AT1G04945 320 / 7e-106 HIT-type Zinc finger family protein (.1.2.3) AT4G03320 172 / 3e-52 AtTic20-IV, TIC20-IV translocon at the inner envelope membrane of chloroplasts 20-IV (.1) AT2G47840 45 / 2e-05 AtTic20-II translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G031800 [exp] 449 / 9e-162 AT1G04940 363 / 1e-127 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) Potri.019G108800 [exp] 185 / 4e-57 AT4G03320 283 / 2e-95 translocon at the inner envelope membrane of chloroplasts 20-IV (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033195 [exp] 350 / 2e-122 AT1G04940 341 / 7e-119 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) Lus10010636 [exp] 348 / 1e-121 AT1G04940 338 / 9e-118 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) Lus10039783 [exp] 167 / 2e-50 AT4G03320 263 / 1e-87 translocon at the inner envelope membrane of chloroplasts 20-IV (.1) Lus10026842 [exp] 41 / 0.0004 AT2G47840 219 / 1e-72 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16166 [poplar] [flax] TIC20 Chloroplast import apparatus Tic20-like
Representative CDS sequence Show only first row Show all	>Potri.005G231400.1 pacid=42804096 polypeptide=Potri.005G231400.1.p locus=Potri.005G231400 ID=Potri.005G231400.1.v4.1 annot-version=v4.1 ATGCTTCTGAATGACTGCACCATGCCCTCTGGGTCTGGTTTTACTAACACCAGAGCATGTAAAACTATGCCTGGTATTGTGGTTTCGGCAAGTGTTCCTT GCACAACTGCCAGGGCTGCATTGTTGAACAGCAGGGCTTCATTGGGACGACAATTGGACTCTAAATCCTGGTCATCTAGAGGTTTGCCTTCTTTGCTTCT TTCAGCTGCATCAATGCCTCTCTTAAGTGGAGATTATGGTAGATTTTCACACAATATTCCCACATATCCTCGGCAGCGCAGATCCTATTCATGCCCTCGA GCATCAAAAGATGTCCCATACAGTTATCGATTTCCTCCAATGACCAAGAAGCCAGGATGGTGGTGGAGGACTTTAGCATGCCTGCCCTATTTGATGCCTC TTCATGAAACATGGATGTATGCTGAGACGGCATATCATCTACATCCGTTCCTTGAAGACTTTGAATTTTTGACCTACCCATTCCTTGGAGCCATTGGGAG GTTACCAAGCTGGTTCTTGATGGCATATTTCTTTGTTGCATATCTTGGAGTGGTGAGGAGGAAGGAGTGGCCTCACTTTTTCAGATTTCATGTGGTAATG GGCATGCTATTGGAGATTGCTCTCCAGGTTATAGGTACAGTGAGCCGATGGATGCCACTTGCTGTTTATTGGGGTAAACTGGGCATGCACTTCTGGACAG CCGTGGCATTTGCTTATCTTTTTACAGTCCTAGAGTGCATACGTTGTGCTCTTGCTGGTATGTATGCTGATGTCCCTTTTGCCTGTGATGCGGCATACAT TCAAATCCCATATGATTAA
AA sequence Show only first row Show all	>Potri.005G231400.1 pacid=42804096 polypeptide=Potri.005G231400.1.p locus=Potri.005G231400 ID=Potri.005G231400.1.v4.1 annot-version=v4.1 MLLNDCTMPSGSGFTNTRACKTMPGIVVSASVPCTTARAALLNSRASLGRQLDSKSWSSRGLPSLLLSAASMPLLSGDYGRFSHNIPTYPRQRRSYSCPR ASKDVPYSYRFPPMTKKPGWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGVVRRKEWPHFFRFHVVM GMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVLECIRCALAGMYADVPFACDAAYIQIPYD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Potri.005G231400 [exp]	0	1
AT5G08400			Protein of unknown function (D...		Potri.010G255300 [exp]	2.23	0.9490
AT1G07700			Thioredoxin superfamily protei...		Potri.014G029200 [exp]	3.46	0.9549
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Potri.002G195200 [exp]	6.00	0.9438	CLPP5.2
AT1G16080			unknown protein		Potri.003G185501 [exp]	9.38	0.9519
AT3G02720			Class I glutamine amidotransfe...		Potri.017G143880 [exp]	11.91	0.8919
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Potri.013G026500 [exp]	12.64	0.9479
AT2G04790			unknown protein		Potri.014G162700 [exp]	13.03	0.9397
AT3G54210			Ribosomal protein L17 family p...		Potri.016G143100 [exp]	13.74	0.9504
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Potri.019G083400 [exp]	13.85	0.9495	Pt-RPL21.3
AT4G08280			Thioredoxin superfamily protei...		Potri.002G085200 [exp]	13.85	0.9143

Compare expression of checked genes

Potri.005G231400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.