Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75400 337 / 4e-112 RING/U-box superfamily protein (.1) AT1G19680 302 / 1e-98 RING/U-box superfamily protein (.1) AT4G39140 191 / 4e-56 RING/U-box superfamily protein (.1.2.3.4.5) AT2G21500 181 / 4e-52 RING/U-box superfamily protein (.1.2) AT1G14180 77 / 2e-15 RING/U-box superfamily protein (.1.2) AT5G18260 74 / 3e-14 RING/U-box superfamily protein (.1) AT5G57820 43 / 0.0001 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G031600 [exp] 698 / 0 AT1G75400 329 / 7e-109 RING/U-box superfamily protein (.1) Potri.004G158400 [exp] 280 / 3e-90 AT4G39140 352 / 2e-118 RING/U-box superfamily protein (.1.2.3.4.5) Potri.009G120000 [exp] 258 / 2e-81 AT4G39140 340 / 2e-113 RING/U-box superfamily protein (.1.2.3.4.5) Potri.013G060900 [exp] 78 / 2e-15 AT5G18260 123 / 9e-32 RING/U-box superfamily protein (.1) Potri.019G032300 [exp] 76 / 1e-14 AT5G18260 122 / 2e-31 RING/U-box superfamily protein (.1) Potri.006G063100 [exp] 69 / 3e-13 AT4G39140 65 / 7e-12 RING/U-box superfamily protein (.1.2.3.4.5) Potri.018G119600 [exp] 67 / 1e-12 AT1G75400 63 / 2e-11 RING/U-box superfamily protein (.1) Potri.006G180600 [exp] 47 / 2e-05 AT5G18260 52 / 4e-07 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017978 [exp] 233 / 5e-72 AT4G39140 318 / 3e-105 RING/U-box superfamily protein (.1.2.3.4.5) Lus10041970 [exp] 226 / 4e-69 AT4G39140 316 / 3e-104 RING/U-box superfamily protein (.1.2.3.4.5) Lus10020256 [exp] 78 / 2e-15 AT5G18260 124 / 4e-32 RING/U-box superfamily protein (.1) Lus10002639 [exp] 79 / 3e-15 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10036764 [exp] 69 / 6e-13 AT1G14180 134 / 2e-37 RING/U-box superfamily protein (.1.2) Lus10008046 [exp] 67 / 1e-12 AT4G39140 65 / 4e-12 RING/U-box superfamily protein (.1.2.3.4.5) Lus10037162 [exp] 62 / 8e-10 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G231500.7 pacid=42805211 polypeptide=Potri.005G231500.7.p locus=Potri.005G231500 ID=Potri.005G231500.7.v4.1 annot-version=v4.1 ATGGGAGCAGCTTGTTGTGTAGCTGCAAGAGATAATGATTTTCCCACCGGGACTGGATGTCGAGCATTGCATGGGAATGCCGGATGTTCTCCAACATTGA GTTTTCGTTGGGACAACAGAAGGCGTGTGGCTGGTGAAATTGAGGACTCCTCGTATCAAATGTCTCGTGGAGTCAGCAGAGATGTTAGTGTGGAGATGAA GGGGACTTTAGGTTCTGACAGAGGTAATCTTTCAGATGGGTTAAGCCCACTTGAGAGCTTTGGAACACCTATATCTTTGAAATCGCCGGTTCATGAAGGA ATGGGTGTAAATTTGACGACTCAACCTTCAGATCTATCCATGGAAAGCAATTACCCTATGGAAGTGAAGAGCTTGGCAGAATCACCTGATATTGCAGACT TGCCATTACCGAAGATTGCTTATTCTGTACAGTCATCATTTTCAACACCTACTGCTGATCCTTTACCGACCTGTGGCCATCCACTCCCTCCCAACTCAAC CCCATCGAGACGGGCTCGTCGCTCACCTGGTCACCGGTTATTAAGACAGATTTCTGATAGTCGAATCCTGGGATTAAAATCACCAAATAACTATTCTTTG TCTGAAGGAAGGTCATCATTTGTGCTCTCCACTTGCAGCCATGACTTGGCAGTGGAATCCCATGGTGGATCTTCAGATGGATGGTCCATGAGAACCTTCT CTGAGCTTGTGGCCTCTTCACAAAGAGGGAGGTGGTCTTTTGACAGTGAGCACTTTGGCGCTGGCTTTGGAAAAATAAGTGGATGTAGCAGTAGGTTCTC GTGTTCTCCCTCCTTAGATCCGCAAGCTTGCGGAGCTTGCTCAAAGTTCTTGACTGAGAAATCTGTGTGGAGTAGCCAGAGAATTGCTGGCACCCATGAG TTCCCAGTGGTTGCTATGCTGGTATGTGGTCATGTATACCATGCAGAGTGCTTGGAGGCCACAACACCGGAGGTTGACAAGTATGATCCTGCATGCCCAA TATGTGAGGGCGGAGAGAAGCAAGTCTTGAAGATGTCCAAAAAAGCTTTAAAAACAGAAGCAGAATTAAAAGCAAAAAGCCTTAAGATATCAAGAAACCG AGTCGTTGATAGTTACCTTGATAGTGATTCTGATGATTTTTATCAACAGAAGAATGCCATACAAGACAGAGATGCTGCAAAGATGGATCCCAGTTCTAGT GTAGCAAGCTCCTCCTTGAAGCCATTCTTGAGACGACACTTTTCATTTAGGTCCAAATGGAGTAGAACCCTTTCAGAGAAAAGAGGGTTTTGGGCAAGAC ATCGCAAAGATTGA
AA sequence Show only first row Show all	>Potri.005G231500.7 pacid=42805211 polypeptide=Potri.005G231500.7.p locus=Potri.005G231500 ID=Potri.005G231500.7.v4.1 annot-version=v4.1 MGAACCVAARDNDFPTGTGCRALHGNAGCSPTLSFRWDNRRRVAGEIEDSSYQMSRGVSRDVSVEMKGTLGSDRGNLSDGLSPLESFGTPISLKSPVHEG MGVNLTTQPSDLSMESNYPMEVKSLAESPDIADLPLPKIAYSVQSSFSTPTADPLPTCGHPLPPNSTPSRRARRSPGHRLLRQISDSRILGLKSPNNYSL SEGRSSFVLSTCSHDLAVESHGGSSDGWSMRTFSELVASSQRGRWSFDSEHFGAGFGKISGCSSRFSCSPSLDPQACGACSKFLTEKSVWSSQRIAGTHE FPVVAMLVCGHVYHAECLEATTPEVDKYDPACPICEGGEKQVLKMSKKALKTEAELKAKSLKISRNRVVDSYLDSDSDDFYQQKNAIQDRDAAKMDPSSS VASSSLKPFLRRHFSFRSKWSRTLSEKRGFWARHRKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75400			RING/U-box superfamily protein...		Potri.005G231500 [exp]	0	1
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Potri.002G069800 [exp]	6.00	0.6670
AT3G15180			ARM repeat superfamily protein...		Potri.001G396500 [exp]	9.43	0.7119
AT3G17120			unknown protein		Potri.010G148200 [exp]	11.66	0.6446
AT3G63220			Galactose oxidase/kelch repeat...		Potri.005G211700 [exp]	13.78	0.6603
AT5G10290			leucine-rich repeat transmembr...		Potri.007G094500 [exp]	14.62	0.6723
AT3G03341			unknown protein		Potri.017G128600 [exp]	37.60	0.6469
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.013G059600 [exp]	42.00	0.6583
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Potri.001G398800 [exp]	46.58	0.6392
AT3G06150			unknown protein		Potri.008G202400 [exp]	57.70	0.6081
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Potri.016G062100 [exp]	74.89	0.5984

Compare expression of checked genes

Potri.005G231500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.