Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35180 308 / 6e-107 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT1G45010 287 / 7e-99 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT1G35170 274 / 1e-93 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010635 [exp] 310 / 4e-108 AT1G35180 273 / 3e-93 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) Lus10033194 [exp] 289 / 3e-99 AT1G35180 270 / 2e-91 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) Lus10014607 [exp] 41 / 0.0005 AT5G14280 311 / 3e-103 DNA-binding storekeeper protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [poplar] [flax] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Potri.005G231600.7 pacid=42805476 polypeptide=Potri.005G231600.7.p locus=Potri.005G231600 ID=Potri.005G231600.7.v4.1 annot-version=v4.1 ATGGAAGAGCGTATTTTAAGAATAATCACATTGGGAATCATTTCATGGACAACAGCATTTCATCTCTTTAGAAAGTTCTTGCCAAAGCGATCTTTTGAAT TCTGCAATCGCCTTGTTTCTACGGTCCATGCAACTTTAGCTTTTACACTTGCTTCTCTCTCTGTTGAAGACTGGACATGCCCAGTTTGTCCTCTGGCTTC GAGACCTTCACCCAGTCAGATGCAAGCCCTGGCAGTTTCCCTTTCTTATCTCATTTATGATCTGATATGTTGTCAATTCGACAAGCGAGTCACCATTGAC AACACGATACACCATTTGGTTAGCATTGTTGGAATAGCAGCAGGCCTTGCCTATGGGAAGTGTGGATCAGAATTGATTGCAGCCCTATGCATAACAGAGA TCTCTAGCCCTTTCCTTCACCTGAGAGAACTTCTCAAGGAGCTTGGTTACAGGGACACTGACCTTAATTTGGCTGCTGATATCTTATTTGCAGTTGTATT CTCGTTTGCAAGAATGGTTTTTGGGCCTTACCTTGCTTGGGTGACTCTTACAGCCGACAATCCTCTCGTTATCAAGGCAATGGCAGTGGGATTACAGCTG GTTAGTGCTTACTGGTTCTTCAAGATTGCCGGGATGATGAAGTACAAGCTAACCAAAAGGGTTGCATCTACGAACCTTGTCTACACTGAAAAGTTGTAA
AA sequence Show only first row Show all	>Potri.005G231600.7 pacid=42805476 polypeptide=Potri.005G231600.7.p locus=Potri.005G231600 ID=Potri.005G231600.7.v4.1 annot-version=v4.1 MEERILRIITLGIISWTTAFHLFRKFLPKRSFEFCNRLVSTVHATLAFTLASLSVEDWTCPVCPLASRPSPSQMQALAVSLSYLIYDLICCQFDKRVTID NTIHHLVSIVGIAAGLAYGKCGSELIAALCITEISSPFLHLRELLKELGYRDTDLNLAADILFAVVFSFARMVFGPYLAWVTLTADNPLVIKAMAVGLQL VSAYWFFKIAGMMKYKLTKRVASTNLVYTEKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.005G231600 [exp]	0	1
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Potri.003G129100 [exp]	6.85	0.9656	Pt-CYP86.7
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G117000 [exp]	9.38	0.9638
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.015G007600 [exp]	9.59	0.9039
					Potri.011G006500 [exp]	12.12	0.9621
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G118900 [exp]	13.78	0.9514
AT5G04160			Nucleotide-sugar transporter f...		Potri.016G043200 [exp]	13.85	0.9212
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G140700 [exp]	18.43	0.9528
AT3G26760			NAD(P)-binding Rossmann-fold s...		Potri.014G145800 [exp]	19.69	0.8414
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.004G123200 [exp]	19.74	0.9574	Pt-EXP2.4
AT3G04080		ATAPY1	apyrase 1 (.1)		Potri.019G031200 [exp]	20.32	0.9568	Pt-APY1.2

Compare expression of checked genes

Potri.005G231600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.