Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPT4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45000 757 / 0 AAA-type ATPase family protein (.1.2) AT5G43010 751 / 0 RPT4A regulatory particle triple-A ATPase 4A (.1) AT5G19990 336 / 1e-112 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT1G53750 333 / 1e-111 RPT1A regulatory particle triple-A 1A (.1) AT5G20000 333 / 1e-111 RPT6A AAA-type ATPase family protein (.1) AT4G29040 324 / 1e-107 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 323 / 2e-107 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT1G53780 323 / 2e-105 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G58290 303 / 6e-100 RPT3 regulatory particle triple-A ATPase 3 (.1) AT3G05530 295 / 2e-96 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G031400 [exp] 775 / 0 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.009G120500 [exp] 767 / 0 AT1G45000 744 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G158600 [exp] 766 / 0 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Potri.006G216600 [exp] 334 / 1e-111 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.001G161700 [exp] 333 / 3e-111 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.018G056600 [exp] 330 / 4e-110 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.008G144100 [exp] 329 / 8e-110 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.010G098300 [exp] 324 / 5e-108 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.014G194700 [exp] 324 / 1e-107 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017475 [exp] 752 / 0 AT1G45000 759 / 0.0 AAA-type ATPase family protein (.1.2) Lus10017972 [exp] 749 / 0 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Lus10041964 [exp] 743 / 0 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Lus10028807 [exp] 739 / 0 AT1G45000 748 / 0.0 AAA-type ATPase family protein (.1.2) Lus10031815 [exp] 335 / 1e-111 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10017762 [exp] 331 / 9e-111 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10031243 [exp] 334 / 4e-110 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1) Lus10015524 [exp] 317 / 2e-106 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10011901 [exp] 323 / 2e-105 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 315 / 6e-104 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.005G231700.1 pacid=42804868 polypeptide=Potri.005G231700.1.p locus=Potri.005G231700 ID=Potri.005G231700.1.v4.1 annot-version=v4.1 ATGGCAACCATAAACAACGACGGAGAAGACGCAGCACGACGTCGCAATGCAGAGGCGGAGTACCGCAAAAAGTTACTCCACCACAAAGAGCTCGAATCCA GAGTTCGATCTGCGAGGGAGAATTTGAAAGCTGCAAAGAAAGAATTTAACAAAACCGAAGATGATTTGAAGTCTCTTCAAAGTGTTGGTCAGATTATAGG AGAAGTTCTTCGACCTCTTGACAACGAACGCTTGATTGTTAAAGCTAGCAGTGGACCTCGGTATGTGGTAGGCTGCCGTAGTAAAGTGGATAAGGAAAAA CTGACTTCAGGAACCAGAGTGGTTCTTGATATGACTACGCTTACGATTATGCGTGCTCTTCCGCGCGAAGTTGATCCAGTTGTTTATAACATGCTGCACG AAGATCCTGGTAATGTGAGTTACTCGGCTGTTGGTGGTTTATCTGATCAGATTAGGGAACTAAGGGAATCCATTGAGTTACCTCTGATGAACCCTGAGCT TTTCCTTAGGGTGGGGATTAAACCTCCCAAGGGTGTCCTTCTTTATGGACCTCCTGGTACTGGGAAGACATTGTTGGCTAGGGCCATTGCGAGCAACATA GATGCCAACTTTTTGAAGGTTGTTTCAAGTGCCATCATTGACAAATACATAGGAGAAAGTGCTAGGTTGATACGAGAAATGTTTGGATATGCACGTGATC ACCAACCCTGCATCATTTTCATGGATGAGATCGATGCAATTGGTGGACGCCGTTTTAGTGAGGGAACAAGTGCTGATCGTGAAATCCAAAGAACATTGAT GGAGTTGCTTAACCAACTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCAACGAACCGCCCTGATGTTCTTGACCCTGCACTTCTTCGT CCGGGAAGATTAGACAGAAAGATAGAGATTCCACTACCAAATGAACAGTCAAGAATGGAAATCCTAAAGATCCATGCTGCTGGAATTGCCAAGCATGGAG ATATAGATTATGAGGCTGTTGTGAAACTTGCAGAGGGTTTCAATGGAGCTGATCTTCGTAATGTTTGCACGGAAGCGGGGATGTCAGCAATCCGTGCAGA ACGCGATTATGTCATCCATGAAGATTTTATGAAGGCTGTACGGAAGCTTAATGAAGCAAAGAAACTCGAGTCTAGCGCACATTATAATGCTGATTTTGGC AAAGACTGA
AA sequence Show only first row Show all	>Potri.005G231700.1 pacid=42804868 polypeptide=Potri.005G231700.1.p locus=Potri.005G231700 ID=Potri.005G231700.1.v4.1 annot-version=v4.1 MATINNDGEDAARRRNAEAEYRKKLLHHKELESRVRSARENLKAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEK LTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI DANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLR PGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFG KD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45000			AAA-type ATPase family protein...		Potri.005G231700 [exp]	0	1	RPT4.1
AT1G65270			unknown protein		Potri.019G055100 [exp]	1.00	0.9465
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.001G276700 [exp]	1.41	0.9443
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G031000 [exp]	3.31	0.9236	RPT1.3
AT3G14290		PAE2	20S proteasome alpha subunit E...		Potri.001G162900 [exp]	3.46	0.9388	Pt-PAE1.1
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Potri.014G069800 [exp]	6.32	0.9247	PBF1.2
AT1G09150			pseudouridine synthase and arc...		Potri.005G023600 [exp]	6.92	0.9313
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Potri.001G120900 [exp]	7.34	0.9084	Pt-KAS.2
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Potri.002G181300 [exp]	7.74	0.9333
AT5G05010			clathrin adaptor complexes med...		Potri.015G125400 [exp]	9.32	0.9415
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Potri.015G122400 [exp]	9.38	0.9273

Compare expression of checked genes

Potri.005G231700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.