Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75450 802 / 0 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT2G41510 559 / 0 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 535 / 0 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT5G56970 497 / 2e-172 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT4G29740 488 / 9e-169 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT2G19500 484 / 1e-167 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT5G21482 450 / 8e-154 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT3G47930 45 / 8e-05 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G030500 [exp] 996 / 0 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.003G203600 [exp] 557 / 0 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 545 / 0 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.006G152500 [exp] 543 / 0 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.006G047900 [exp] 541 / 0 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.016G044100 [exp] 535 / 0 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.007G066100 [exp] 463 / 1e-158 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.006G221000 [exp] 451 / 3e-154 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.011G160900 [exp] 43 / 0.0004 AT1G30760 646 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024289 [exp] 756 / 0 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10003845 [exp] 597 / 0 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10031188 [exp] 447 / 6e-153 AT5G56970 484 / 1e-167 cytokinin oxidase 3 (.1) Lus10026471 [exp] 438 / 7e-149 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10031200 [exp] 410 / 3e-138 AT2G19500 464 / 1e-159 cytokinin oxidase 2 (.1) Lus10027611 [exp] 377 / 4e-126 AT5G56970 407 / 3e-138 cytokinin oxidase 3 (.1) Lus10005317 [exp] 359 / 7e-120 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 357 / 6e-118 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10031765 [exp] 353 / 4e-113 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4) Lus10016363 [exp] 323 / 5e-106 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF09265 [poplar] [flax] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Potri.005G232300.1 pacid=42802810 polypeptide=Potri.005G232300.1.p locus=Potri.005G232300 ID=Potri.005G232300.1.v4.1 annot-version=v4.1 ATGGCTACTAAGCTTCTCTTAACGTTCGCTATCTGTCGTTTGATTGTGACTGTAGGGTTGACTGTTGACCCATCGGAGCTACTTCGTCTTGGGGTTGACG GTCAGCTCAGCGTTGATCCGTTTGATGTCGAAACGGCTTCTCTTGATTTCGGCTTGATAAGCCGATCCGAACCGATGGCAGTCTTGCACCCGGGTTCCGC TGATGACATAGCTCGGCTTGTCCAAGCGGCGTACCTCTCGTCTCAGGGTTTCACGGTCTCGGCTAGGGGTCATGGGCATTCCATAAACGGTCAGGCACAG ACAAGTAACGGGGTGGTGATTGAAATGAATGGCGGCTCGAGAGGGAGTCGCCTTGGGTTGGGGAACCTGGCAAAGCCACAAGTAGCTGTGAAGGAGATGC ATGTAGACGTGTGGGGAGGGGAGCTGTGGATAGATGTGTTAAGGAGTACATTAGAGCATGGGCTAGCACCAAAATCATGGACAGATTATTTGTATCTTTC AGTAGGTGGTACCTTATCTAATGGTGGAATTAGTGGGCAAGCTTTTAACCATGGACCTCAAATTAGCAATGTCTATGAGCTTGACGTCGTCACAGGCAAA GGTGAGCTCATGACATGCTCCGAAGAAAAAAATTCAAAGCTGTTCCATGCTGTTCTTGGTGGTCTAGGGCAATTTGGAATCATCACTAGGGCTAGAATTG CACTTGAACCAGCTCCTCAAAGGGTGAGGTGGATAAGAGTACTGTACTCCAACTTCTCGACTTTTACCGGGGACCAAGAATACCTCATTTCCATGCATGG AAAACCTTCTACCTTAAAATTCGATTATGTCGAGGGATTTGTTATTGTTGATGAAGGGCTTATTAACAATTGGAGGTCCTCTTTCTTTTCCCCTCGTAAT CCTGTCAAGATTAGCTCAGTTGGGGCTAATGGGGGTGTGCTCTACTGCTTAGAGATCACCAAAAATTACGATGAATCCACTGGCGATACCATTGATCAGG AAGTAGAGGCTTTGATGAAGAACCTGAACTTCATACCATCAACAGTCTTCACAACCGATCTGCCCTACACTGATTTTCTGGATCGCGTCCACAGGGCCGA GTTAAAGCTGAGAGCCAAGGGTTTGTGGGAGGTGCCGCACCCTTGGCTCAACCTATTTGTTCCCAGATCAAGGATTGCTGACCTTGACAGGGGTGTCTTC AAGGGCATTTTGGGAAACAACAAGACAAGTGGGCCCATCCTCATTTACCCCATGAACAAAAACAAGTGGGACCAAAGGAGCTCAGTTGTGACACCAGATG AGGATGTGTTTTATCTGGTGGCGTTGTTAAGATCAGCATTGGATAATGGTGAAGAGACTCAGTCCTTGGAGTACTTGACTGATCAAAACCGTAAGATCCT CAGATTCTGTGATGATGCAGGGATCAAGGTGAAACAGTATTTACCTCACTACACTACACGAGAGGAATGGATGGACCACTTTGGGGATAAATGGGACCGA TTTTATCAGAGGAAAATGGAATTTGATCCCCGGCGTATTTTAGCAACTGGCCAACGTATATTCAATCCCTCCTCTGCCTCTACCAGTACGGTGTCTCCAT GGTGA
AA sequence Show only first row Show all	>Potri.005G232300.1 pacid=42802810 polypeptide=Potri.005G232300.1.p locus=Potri.005G232300 ID=Potri.005G232300.1.v4.1 annot-version=v4.1 MATKLLLTFAICRLIVTVGLTVDPSELLRLGVDGQLSVDPFDVETASLDFGLISRSEPMAVLHPGSADDIARLVQAAYLSSQGFTVSARGHGHSINGQAQ TSNGVVIEMNGGSRGSRLGLGNLAKPQVAVKEMHVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNGGISGQAFNHGPQISNVYELDVVTGK GELMTCSEEKNSKLFHAVLGGLGQFGIITRARIALEPAPQRVRWIRVLYSNFSTFTGDQEYLISMHGKPSTLKFDYVEGFVIVDEGLINNWRSSFFSPRN PVKISSVGANGGVLYCLEITKNYDESTGDTIDQEVEALMKNLNFIPSTVFTTDLPYTDFLDRVHRAELKLRAKGLWEVPHPWLNLFVPRSRIADLDRGVF KGILGNNKTSGPILIYPMNKNKWDQRSSVVTPDEDVFYLVALLRSALDNGEETQSLEYLTDQNRKILRFCDDAGIKVKQYLPHYTTREEWMDHFGDKWDR FYQRKMEFDPRRILATGQRIFNPSSASTSTVSPW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Potri.005G232300 [exp]	0	1
AT3G62270			HCO3- transporter family (.1)		Potri.014G116000 [exp]	2.00	0.8297
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.017G002950 [exp]	5.00	0.7612
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Potri.016G044100 [exp]	21.35	0.6692
AT3G58060			Cation efflux family protein (...		Potri.001G010300 [exp]	24.00	0.7585
AT3G02468		CPuORF9	conserved peptide upstream ope...		Potri.018G101400 [exp]	28.51	0.6082
AT3G22060			Receptor-like protein kinase-r...		Potri.017G039966 [exp]	33.80	0.6550
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G013900 [exp]	69.45	0.6331
					Potri.005G064250 [exp]	82.88	0.6211
AT3G61980			serine protease inhibitor, Kaz...		Potri.014G108700 [exp]	84.40	0.6783
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.008G112200 [exp]	141.98	0.6032

Compare expression of checked genes

Potri.005G232300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.