Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GAL1.7
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36360 1332 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT1G45130 1212 / 0 BGAL5 beta-galactosidase 5 (.1) AT3G13750 1156 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G26140 991 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT3G52840 972 / 0 BGAL2 beta-galactosidase 2 (.1) AT5G56870 948 / 0 BGAL4 beta-galactosidase 4 (.1) AT2G28470 927 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 860 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G63810 783 / 0 BGAL10 beta-galactosidase 10 (.1) AT5G20710 776 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G018100 [exp] 1380 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 1186 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 1168 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 1164 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 1150 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G099800 [exp] 941 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.009G012400 [exp] 931 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.011G044300 [exp] 881 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.017G057900 [exp] 869 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041798 [exp] 1331 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 1325 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10028348 [exp] 1235 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10024292 [exp] 1204 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1) Lus10037644 [exp] 1172 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 1159 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 1157 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000803 [exp] 1113 / 0 AT1G45130 1050 / 0.0 beta-galactosidase 5 (.1) Lus10006009 [exp] 976 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10028848 [exp] 954 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0058 [poplar] [flax] PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Potri.005G232600.1 pacid=42803927 polypeptide=Potri.005G232600.1.p locus=Potri.005G232600 ID=Potri.005G232600.1.v4.1 annot-version=v4.1 ATGGGAACTAGTTCAGTTTCCAAGTTCTTAACCCTCTTCTTGATGGTCTTGATTGTTGGTTCTAAGCTGATCCACTGCACTGTGACCTATGATAAGAAAG CTATTATCATCGATGGACAAAGAAGAATCCTTATCTCTGGCTCCATTCACTATCCAAGAAGCACCCCTGATATGTGGGAAGATCTTGTACAGAAGGCAAA AGATGGAGGCTTGGATGTTATCGACACTTATGTTTTTTGGAATGTTCATGAGCCTTCTCCTGGCAATTATAATTTTGAAGGTAGATTTGATCTGGTACGG TTCATTAAGACGGTGCAGAAAGGGGGGCTATATGTTCATCTCCGCATTGGACCTTATGTCTGTGCAGAATGGAATTTTGGGGGATTTCCTGTTTGGTTGA AGTATGTTCCTGGTATCAGCTTCAGAACAGACAATGGGCCTTTCAAGGCTGCAATGCAAGGATTCACCCAGAAGATTGTGCAGATGATGAAAGATGAAAG GCTATTTCAATCACAAGGAGGCCCCATCATTTTCTCTCAAATTGAGAATGAGTACGGACCAGAGAGTAGGGCTTTTGGGGCTGCTGGTCATTCATACATT AATTGGGCTGCACAAATGGCTGTTGGATTGAAGACTGGAGTTCCTTGGGTGATGTGCAAGGAAGATGATGCCCCAGACCCGGTGATAAATACATGTAATG GTTTTTACTGTGATGCTTTTTCTCCCAACAAACCTTACAAGCCAACGATGTGGACTGAGGCTTGGAGTGGCTGGTTTACAGAGTTTGGCGGCGCATTTCA CCACAGACCAGTTCAAGATTTAGCATTTGCAGTTGCTCGATTCATTCAAAAGGGTGGCTCATTTGTTAACTACTACATGTACCATGGAGGAACAAATTTT GGACGCTCTGCTGGAGGTCCATTCATTACAACTAGTTATGACTATGATGCACCAATAGATGAATATGGTTTGATCAGGGAACCTAAATATGGTCATCTAA AAGAGCTTCACAGAGCTATTAAGCTATGCGAGCATGAATTAGTCTCTTCAGATCCCACAATTACTTTGTTAGGAACCTATCAGCAGGCTCATGTATTCTC TTCAGGGAAGAGGAGCTGTTCAGCTTTTCTTGCCAACTACCACACACAGTCTGCTGCTAGAGTGATGTTCAATAACATGCACTATGTTTTGCCTCCTTGG TCCATTAGCATCCTTCCTGATTGCAGGAATGTTGTGTTTAACACTGCCAAGGTTGGAGTACAAACTTCGCATGTCCAAATGCTGCCAACTGGTTCTAGGT TTTTTTCTTGGGAGAGTTATGACGAAGATATTTCTTCACTAGGGGCTAGTTCAAGGATGACAGCTCTTGGACTCATGGAGCAGATAAATGTCACTAGAGA CACCACTGACTATCTGTGGTACATCACAAGTGTCAATATCAATCCATCAGAATCATTTCTTCGAGGTGGACAATGGCCTACTCTAACTGTGGAGTCAGCA GGGCATGCTCTTCATGTCTTCATCAATGGGCAGTTTTCAGGATCAGCGTTTGGGACCAGAGAGAACAGGGAATTCACCTTTACAGGACCAGTCAATCTAC GTGCTGGAACAAATAGAATTGCACTACTCAGCATAGCTGTTGGATTACCTAATGTCGGGGTGCATTATGAGACATGGAAAACAGGAATACTTGGTCCAGT TATGCTCCATGGCCTTAACCAGGGAAATAAAGACTTGACATGGCAGCAATGGTCTTACCAGGTTGGTCTAAAAGGAGAGGCAATGAATTTGGTCTCTCCA AACAGAGCCTCATCTGTTGATTGGATACAGGGGTCTCTAGCTACCAGGCAGCAACCTTTGAAGTGGTACAAGGCTTATTTTGATGCCCCCGGAGGAAATG AGCCATTGGCTTTGGACATGCGCAGCATGGGAAAGGGTCAGGTGTGGATAAATGGGCAGAGCATAGGAAGATATTGGTTATCTTATGCAAAGGGTGACTG CAGTAGCTGTGGTTACTCTGGAACGTTCAGGCCTCCAAAGTGCCAACTTGGATGTGGCCAGCCAACTCAGCGATGGTATCATGTTCCCAGGTCCTGGTTA AAGCCGAAGCAAAATTTATTGGTAATATTTGAAGAACTTGGAGGTGATGCATCAAAGATATCCCTTGTTAAGAGATCAACGACAAGTGTTTGTGCTGATG CATTTGAGCACCACCCAACAATTGAGAATTACAATACCGAGAGCAATGGTGAATCAGAAAGAAATCTTCACCAAGCCAAGGTTCACCTCCGGTGTGCACC AGGGCAGTCTATATCAGCTATAAATTTTGCGAGTTTTGGCACTCCTACTGGAACCTGTGGAAGTTTTCAGGAGGGAACTTGCCATGCACCAAACTCACAC TCGGTTGTAGAGAAGAAATGCATAGGAAGGGAGAGTTGTATGGTCGCCATATCCAACAGTAACTTCGGTGCTGACCCATGTCCAAGTAAGTTGAAGAAAT TATCAGTTGAAGCAGTTTGTTCAACAGTGAGTGACACTACTCAACCCAATACAAGGAGGTAA
AA sequence Show only first row Show all	>Potri.005G232600.1 pacid=42803927 polypeptide=Potri.005G232600.1.p locus=Potri.005G232600 ID=Potri.005G232600.1.v4.1 annot-version=v4.1 MGTSSVSKFLTLFLMVLIVGSKLIHCTVTYDKKAIIIDGQRRILISGSIHYPRSTPDMWEDLVQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRFDLVR FIKTVQKGGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKAAMQGFTQKIVQMMKDERLFQSQGGPIIFSQIENEYGPESRAFGAAGHSYI NWAAQMAVGLKTGVPWVMCKEDDAPDPVINTCNGFYCDAFSPNKPYKPTMWTEAWSGWFTEFGGAFHHRPVQDLAFAVARFIQKGGSFVNYYMYHGGTNF GRSAGGPFITTSYDYDAPIDEYGLIREPKYGHLKELHRAIKLCEHELVSSDPTITLLGTYQQAHVFSSGKRSCSAFLANYHTQSAARVMFNNMHYVLPPW SISILPDCRNVVFNTAKVGVQTSHVQMLPTGSRFFSWESYDEDISSLGASSRMTALGLMEQINVTRDTTDYLWYITSVNINPSESFLRGGQWPTLTVESA GHALHVFINGQFSGSAFGTRENREFTFTGPVNLRAGTNRIALLSIAVGLPNVGVHYETWKTGILGPVMLHGLNQGNKDLTWQQWSYQVGLKGEAMNLVSP NRASSVDWIQGSLATRQQPLKWYKAYFDAPGGNEPLALDMRSMGKGQVWINGQSIGRYWLSYAKGDCSSCGYSGTFRPPKCQLGCGQPTQRWYHVPRSWL KPKQNLLVIFEELGGDASKISLVKRSTTSVCADAFEHHPTIENYNTESNGESERNLHQAKVHLRCAPGQSISAINFASFGTPTGTCGSFQEGTCHAPNSH SVVEKKCIGRESCMVAISNSNFGADPCPSKLKKLSVEAVCSTVSDTTQPNTRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.005G232600 [exp]	0	1	GAL1.7
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Potri.005G098600 [exp]	1.00	0.8081
					Potri.006G138400 [exp]	2.44	0.7805
AT5G01090			Concanavalin A-like lectin fam...		Potri.016G107200 [exp]	4.00	0.7690
AT1G75060			unknown protein		Potri.002G133500 [exp]	5.47	0.7934
AT3G13510			Protein of Unknown Function (D...		Potri.001G233000 [exp]	6.48	0.7464
AT1G10180			unknown protein		Potri.015G118500 [exp]	9.48	0.7189
AT1G54200			unknown protein		Potri.018G049900 [exp]	11.95	0.7294
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Potri.001G367900 [exp]	12.36	0.7190
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Potri.018G112800 [exp]	16.70	0.7353
AT4G23490			Protein of unknown function (D...		Potri.001G100700 [exp]	20.49	0.7179

Compare expression of checked genes

Potri.005G232600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.