Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	XBCP3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09850 593 / 0 XBCP3 xylem bark cysteine peptidase 3 (.1) AT3G19390 412 / 2e-141 Granulin repeat cysteine protease family protein (.1) AT5G43060 408 / 8e-140 Granulin repeat cysteine protease family protein (.1) AT1G47128 407 / 1e-139 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT4G35350 336 / 5e-113 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G20850 332 / 2e-111 XCP2 xylem cysteine peptidase 2 (.1) AT4G36880 330 / 2e-110 CP1 cysteine proteinase1 (.1) AT4G23520 324 / 2e-108 Cysteine proteinases superfamily protein (.1) AT3G19400 322 / 2e-107 Cysteine proteinases superfamily protein (.1.2) AT4G11320 313 / 5e-104 Papain family cysteine protease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G098100 [exp] 416 / 2e-142 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.001G302100 [exp] 410 / 3e-140 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.014G024100 [exp] 404 / 6e-138 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.011G066800 [exp] 374 / 4e-126 AT1G09850 359 / 7e-120 xylem bark cysteine peptidase 3 (.1) Potri.011G066900 [exp] 372 / 3e-125 AT1G09850 366 / 7e-123 xylem bark cysteine peptidase 3 (.1) Potri.004G207600 [exp] 360 / 2e-122 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.004G057700 [exp] 358 / 9e-120 AT1G09850 362 / 4e-121 xylem bark cysteine peptidase 3 (.1) Potri.007G047600 [exp] 340 / 3e-114 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.005G256000 [exp] 338 / 6e-114 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006130 [exp] 587 / 0 AT1G09850 535 / 0.0 xylem bark cysteine peptidase 3 (.1) Lus10014087 [exp] 400 / 2e-136 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 396 / 6e-135 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10002827 [exp] 396 / 6e-135 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10024801 [exp] 395 / 1e-134 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10019827 [exp] 352 / 5e-119 AT5G43060 501 / 1e-177 Granulin repeat cysteine protease family protein (.1) Lus10013204 [exp] 337 / 3e-113 AT1G20850 509 / 0.0 xylem cysteine peptidase 2 (.1) Lus10030722 [exp] 333 / 6e-112 AT4G35350 511 / 0.0 xylem cysteine peptidase 1 (.1.2) Lus10032406 [exp] 325 / 8e-109 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020723 [exp] 323 / 4e-108 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF00396 [poplar] [flax] Granulin Granulin CL0125 [poplar] [flax] PF08246 [poplar] [flax] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Potri.005G232900.1 pacid=42804523 polypeptide=Potri.005G232900.1.p locus=Potri.005G232900 ID=Potri.005G232900.1.v4.1 annot-version=v4.1 ATGAACTTCCTTTACATCTTTGCACTCACTCTCCTTATCTCTGTCCTTTCTCCTTCCACTTCTTCTTCTGACATCTCTCAACTGTTTGAAACGTGGTGTA AAGAACATGGTAAATCATACACTTCGCAGGAAGAAAGGTCTCATAGACTTAAAGTCTTTGAAGACAACTATGATTTTGTTACAAAACACAACAGCAAGGG TAATTCTTCTTATTCCCTTGCTCTCAATGCCTTTGCTGATCTAACCCATCATGAGTTCAAGACTTCTCGGTTGGGACTCTCTGCTGCTCCTCTGAATCTT GCTCATCGGAATCTAGAAATTACTGGGGTTGTTGGTGATATCCCTGCTTCGATTGATTGGAGAAATAAAGGGGTTGTGACCAATGTCAAGGACCAAGGGA GCTGTGGTGCTTGTTGGTCGTTCTCAGCTACTGGAGCCATCGAAGGCATTAATAAGATTGTCACTGGATCTCTTGTTAGCCTTTCAGAACAAGAGTTGAT TGAGTGTGATAAAAGTTACAATGATGGTTGTGGGGGTGGACTCATGGACTATGCATTCCAATTTGTCATAAACAACCACGGGATTGATACCGAGGAAGAT TATCCATATCGAGCTCGGGATGGGACCTGCAATAAGGACAGGATGAAAAGGCGTGTTGTGACTATTGATAAATATGTTGATGTGCCTGAAAACAACGAGA AACAGCTCTTACAAGCTGTGGCAGCTCAACCTGTGAGTGTGGGTATATGCGGCAGTGAGAGAGCATTTCAGATGTATTCAAAGGGGATTTTCACTGGCCC ATGTTCAACTTCTTTGGATCATGCTGTATTGATTGTAGGATATGGGTCAGAAAATGGAGTGGATTACTGGATTGTGAAGAACTCATGGGGAACTGGTTGG GGAATGCGTGGTTATATGCATATGCAGCGCAATAGTGGCAATTCTCAAGGGGTCTGTGGTATCAACATGCTGGCTTCTTATCCAGTAAAGACGAGCCCAA ATCCACCACCTCCACCCCCACCAGGACCCACTAAATGTAATCTTCTTACTTACTGTGCAGCAGGAGAAACCTGCTGCTGTGCTCGCAAATTTTTTGGAAT TTGCATTTCATGGAAATGCTGTGGATTGGATTCTGCCGTATGTTGTAAGGATCGACTCCACTGTTGCCCCCATGATTACCCAGTTTGTGACACGGACAAG AACATGTGTTTTAAGCGTGCTGGTAATGCCACAAGAATGGAGGCAATAGAGGGAAAAACCTCTGGGAAGTTTGGCAGTTGGAATTCCCTTCCTGAAGCCT GGATTCAGTGA
AA sequence Show only first row Show all	>Potri.005G232900.1 pacid=42804523 polypeptide=Potri.005G232900.1.p locus=Potri.005G232900 ID=Potri.005G232900.1.v4.1 annot-version=v4.1 MNFLYIFALTLLISVLSPSTSSSDISQLFETWCKEHGKSYTSQEERSHRLKVFEDNYDFVTKHNSKGNSSYSLALNAFADLTHHEFKTSRLGLSAAPLNL AHRNLEITGVVGDIPASIDWRNKGVVTNVKDQGSCGACWSFSATGAIEGINKIVTGSLVSLSEQELIECDKSYNDGCGGGLMDYAFQFVINNHGIDTEED YPYRARDGTCNKDRMKRRVVTIDKYVDVPENNEKQLLQAVAAQPVSVGICGSERAFQMYSKGIFTGPCSTSLDHAVLIVGYGSENGVDYWIVKNSWGTGW GMRGYMHMQRNSGNSQGVCGINMLASYPVKTSPNPPPPPPPGPTKCNLLTYCAAGETCCCARKFFGICISWKCCGLDSAVCCKDRLHCCPHDYPVCDTDK NMCFKRAGNATRMEAIEGKTSGKFGSWNSLPEAWIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.005G232900 [exp]	0	1	XBCP3.1
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.001G198100 [exp]	1.00	0.7828	ATTIM23.2
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Potri.014G122600 [exp]	2.82	0.7151
AT5G11500			unknown protein		Potri.006G241900 [exp]	10.39	0.6560
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	12.24	0.7107
AT3G01050		MUB1	membrane-anchored ubiquitin-fo...		Potri.004G124600 [exp]	13.92	0.7643
AT3G54130			Josephin family protein (.1)		Potri.016G110300 [exp]	17.74	0.6927
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Potri.008G003200 [exp]	21.16	0.6716	ATFYPP3.2
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G025100 [exp]	22.97	0.7250
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Potri.008G135980 [exp]	40.00	0.6102
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Potri.001G061000 [exp]	45.16	0.6770

Compare expression of checked genes

Potri.005G232900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.