Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75500 584 / 0 WAT1 Walls Are Thin 1 (.1.2) AT3G53210 392 / 1e-135 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 387 / 5e-134 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G30420 230 / 3e-72 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 225 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 221 / 1e-68 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 219 / 9e-68 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G45370 211 / 6e-65 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT1G21890 209 / 9e-64 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 208 / 1e-63 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G029100 [exp] 702 / 0 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.007G017800 [exp] 434 / 3e-152 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 409 / 3e-142 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.006G033500 [exp] 240 / 1e-75 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 238 / 1e-75 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G165600 [exp] 237 / 5e-75 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 233 / 4e-73 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 228 / 1e-71 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G006600 [exp] 228 / 1e-71 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024301 [exp] 568 / 0 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10010647 [exp] 480 / 2e-170 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10027251 [exp] 399 / 6e-138 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10038959 [exp] 396 / 4e-137 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10041801 [exp] 324 / 8e-110 AT1G75500 365 / 6e-126 Walls Are Thin 1 (.1.2) Lus10028351 [exp] 300 / 9e-101 AT3G53210 311 / 1e-105 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10037284 [exp] 231 / 3e-73 AT5G45370 475 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10035693 [exp] 231 / 3e-72 AT5G45370 502 / 1e-178 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10008708 [exp] 229 / 2e-71 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10033316 [exp] 228 / 5e-71 AT4G19185 520 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.005G233600.1 pacid=42802824 polypeptide=Potri.005G233600.1.p locus=Potri.005G233600 ID=Potri.005G233600.1.v4.1 annot-version=v4.1 ATGCCTGACGTTGGTGGTTCAGCTTCTTCAAGGAGAATGTGGTGTTCGGTTCCTGAAAGATTCCAACTGCACTTGGCCATGTTGGCCTTGCAGTTTGGTT ATGCTGGGTTCCATGTGGTCTCTAGGGCTGCCCTAAATATGGGAGTTAGCAAGCTTGTTTTCCCAGTATATAGGAACATCATCGCTTTGCTTCTGCTCCT TCCCTTTGCATATTTTCTAGAAAAGAAGGAGAGGCCAGCGCTCACTCTCAACTTTGTCCTTCAGTTCTTCTTCCTTGCACTTGTTGGAATAACAGCAAAC CAAGGATTCTACTTGCTGGGTCTGGAGAACACTTCACCCACCTTCGCATCAGCAATCCAAAACTCTGTCCCTGCTATTACCTTTCTCATGGCAGCTCTAC TCCGGATAGAGAAAGTGAGGATAAACAGAAAAGATGGAATAGCAAAAGTACTAGGAACTATCTGCTGTGTAGCAGGGGCCTCAGTGATCACTCTATACAC AGGTCCAGTGGTATACAGCCCAGCTAAACATCTAAACAGACCCACACCAATGTTTGTTTCACTTGGAGATGCTGAGGCCAAGAACTGGACCCTTGGTTGC CTCTACCTCATTGGCCATTGCCTGTCCTGGTCTGGTTGGCTTGTGTTGCAGGCACCAGTTCTAAAGAAGTACCCTGCTAGGCTCTCCGTCACCTCCTACA CTTGTTTCTTTGGGCTTATTCAGTTCATTATTATTGCTGCCTTCATGGAGAGAGATCCACAGGCTTGGATTTTCCACTCTGGTGGAGAACTCTTCACTAT TCTCTACGCAGGAGTGGTCGCATCAGGGATTGCCTTCGCTGTACAGATATGGTGCATTGACAGAGGTGGCCCTGTCTTCGTGGCTGTTTATCAACCTGTA CAGACCCTTGTTGTCGCTATCATGGCCTCCATCGCTTTAGGAGAAGAGTTCTATTTAGGAGGGATCATCGGGGCAGTGTTGATCATAGCAGGATTGTACC TGGTCCTATGGGGCAAAAGCGAAGAAAAGAAGTTCTTGGCATTGGAAAAGGCTGCAATTCAGGCCGCTCCTGAGCACGGAATCAGCAGGGCTCAAACCCA CATCAAGACTTCCCTCACTCAGCCACTGCTCCCTTCGTCAACAGAAAATGTTTGA
AA sequence Show only first row Show all	>Potri.005G233600.1 pacid=42802824 polypeptide=Potri.005G233600.1.p locus=Potri.005G233600 ID=Potri.005G233600.1.v4.1 annot-version=v4.1 MPDVGGSASSRRMWCSVPERFQLHLAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKERPALTLNFVLQFFFLALVGITAN QGFYLLGLENTSPTFASAIQNSVPAITFLMAALLRIEKVRINRKDGIAKVLGTICCVAGASVITLYTGPVVYSPAKHLNRPTPMFVSLGDAEAKNWTLGC LYLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGLIQFIIIAAFMERDPQAWIFHSGGELFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPV QTLVVAIMASIALGEEFYLGGIIGAVLIIAGLYLVLWGKSEEKKFLALEKAAIQAAPEHGISRAQTHIKTSLTQPLLPSSTENV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.005G233600 [exp]	0	1
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.011G053600 [exp]	2.82	0.8448
AT3G62110			Pectin lyase-like superfamily ...		Potri.002G186900 [exp]	3.46	0.8470
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Potri.017G081100 [exp]	4.58	0.8408
AT1G54610			Protein kinase superfamily pro...		Potri.002G065100 [exp]	8.48	0.8228
AT1G70550			Protein of Unknown Function (D...		Potri.008G188000 [exp]	8.48	0.8157
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.015G038700 [exp]	9.48	0.8277	PIN1,PIN1.3
AT1G29980			Protein of unknown function, D...		Potri.011G087500 [exp]	10.00	0.8288
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.014G133500 [exp]	11.22	0.7973
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.009G132100 [exp]	15.49	0.8294	PtrAUX6,Pt-LAX5.1
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.010G125800 [exp]	16.24	0.8236	XYL1.1

Compare expression of checked genes

Potri.005G233600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.