Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75510 353 / 4e-124 Transcription initiation factor IIF, beta subunit (.1) AT3G52270 287 / 1e-97 Transcription initiation factor IIF, beta subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G028900 [exp] 482 / 8e-175 AT1G75510 346 / 5e-121 Transcription initiation factor IIF, beta subunit (.1) Potri.010G219800 [exp] 307 / 2e-105 AT3G52270 295 / 1e-100 Transcription initiation factor IIF, beta subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010631 [exp] 401 / 2e-142 AT1G75510 350 / 2e-122 Transcription initiation factor IIF, beta subunit (.1) Lus10033190 [exp] 400 / 5e-142 AT1G75510 352 / 4e-123 Transcription initiation factor IIF, beta subunit (.1) Lus10040084 [exp] 344 / 3e-120 AT3G52270 322 / 3e-111 Transcription initiation factor IIF, beta subunit (.1) Lus10030963 [exp] 323 / 2e-112 AT3G52270 303 / 1e-104 Transcription initiation factor IIF, beta subunit (.1) Lus10023502 [exp] 315 / 2e-107 AT3G52270 294 / 4e-99 Transcription initiation factor IIF, beta subunit (.1) Lus10040384 [exp] 246 / 8e-82 AT3G52270 226 / 9e-74 Transcription initiation factor IIF, beta subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF02270 [poplar] [flax] TFIIF_beta TFIIF, beta subunit HTH domain
Representative CDS sequence Show only first row Show all	>Potri.005G233800.2 pacid=42803173 polypeptide=Potri.005G233800.2.p locus=Potri.005G233800 ID=Potri.005G233800.2.v4.1 annot-version=v4.1 ATGGAAGAAGATAACAGCAGTAGCAGCGCTAATTTAGAAACATCAAAGGCAGATAAATCTGTTTGGTTGATGAAGTGTCCAGTAGTGGTTGCGAAGTCAT GGAAAACTCATACCTCCCCTTCTTCTTCAGATTCTGCCCCTCTCGCTAAAGTCGTTCTCTCCCTCGATCCTCTCCAATCTGACGATCCCTCTGCTCTTCA GTTCACTATGGAGATGGCTCGCACCGAGGCTGGGAATGTACCGAAGAGTTATTCTTTGAATATGTTTAAAGACTTTGTTCCTATGTGCGTCTTTTCCGAG ACACCTCAAGGGAAGGTCGCCATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCCCATGAGCAGAACATTGAGGAGTATCATAAATTGTGCCGTG AAAGGACGAAGAAATCTATGGTTAAGATTAGGCAGATACAGGTGATTAATAATGACCGTGGAGTTCACATGAGGCCCATGCCTGGAATGGTTGGCTTGAT TTCATCTAGCTCCAAGGATAAGAAGAGACCACAACCAGTTAAACAATCAGACGTTAAGAGAACCAGGAGGGATCGTGGGGAATTGGAAGATATCATGTTC AAGTTATTTGAAAGACAACCAAATTGGGCCTTAAAGCAGCTTGTTCAAGAAACAGATCAACCTGCGCAATTCTTGAAAGAGATACTGAATGAGCTCTGTG TGTACAATAAGCGGGGAACAAACCAAGGAACTTATGAACTTAAGCCAGAATATAAGAAAACTGTTGAGGATACAGGTGCTGATTAA
AA sequence Show only first row Show all	>Potri.005G233800.2 pacid=42803173 polypeptide=Potri.005G233800.2.p locus=Potri.005G233800 ID=Potri.005G233800.2.v4.1 annot-version=v4.1 MEEDNSSSSANLETSKADKSVWLMKCPVVVAKSWKTHTSPSSSDSAPLAKVVLSLDPLQSDDPSALQFTMEMARTEAGNVPKSYSLNMFKDFVPMCVFSE TPQGKVAMEGKVEHKFDMKPHEQNIEEYHKLCRERTKKSMVKIRQIQVINNDRGVHMRPMPGMVGLISSSSKDKKRPQPVKQSDVKRTRRDRGELEDIMF KLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKTVEDTGAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75510			Transcription initiation facto...		Potri.005G233800 [exp]	0	1
AT3G19950			RING/U-box superfamily protein...		Potri.015G028400 [exp]	1.00	0.9503
AT3G19910			RING/U-box superfamily protein...		Potri.005G090800 [exp]	2.00	0.9186
AT5G43210			Excinuclease ABC, C subunit, N...		Potri.001G260600 [exp]	2.44	0.9222
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.006G033201 [exp]	3.00	0.9024
AT2G19270			unknown protein		Potri.006G075000 [exp]	3.46	0.9269
AT5G48655			RING/U-box superfamily protein...		Potri.003G148300 [exp]	4.47	0.9129
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G101400 [exp]	5.29	0.9061	HMGB915
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.002G141100 [exp]	5.29	0.8943	Pt-MSJ1.3
AT3G47940			DNAJ heat shock family protein...		Potri.015G066100 [exp]	6.32	0.9060
AT1G17130			Family of unknown function (DU...		Potri.011G096100 [exp]	6.63	0.8970

Compare expression of checked genes

Potri.005G233800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.