Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21410 1195 / 0 VHA-A2 vacuolar proton ATPase A2 (.1) AT4G39080 1177 / 0 VHA-A3 vacuolar proton ATPase A3 (.1) AT2G28520 1009 / 0 VHA-A1 vacuolar proton ATPase A1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G028600 [exp] 1494 / 0 AT2G21410 1187 / 0.0 vacuolar proton ATPase A2 (.1) Potri.009G121400 [exp] 1190 / 0 AT4G39080 1300 / 0.0 vacuolar proton ATPase A3 (.1) Potri.004G160400 [exp] 1183 / 0 AT4G39080 1245 / 0.0 vacuolar proton ATPase A3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024304 [exp] 1273 / 0 AT4G39080 1288 / 0.0 vacuolar proton ATPase A3 (.1) Lus10002104 [exp] 1221 / 0 AT4G39080 1226 / 0.0 vacuolar proton ATPase A3 (.1) Lus10017490 [exp] 1152 / 0 AT4G39080 1312 / 0.0 vacuolar proton ATPase A3 (.1) Lus10028796 [exp] 1068 / 0 AT4G39080 1193 / 0.0 vacuolar proton ATPase A3 (.1) Lus10018129 [exp] 1055 / 0 AT2G28520 1367 / 0.0 vacuolar proton ATPase A1 (.1) Lus10036133 [exp] 1054 / 0 AT2G28520 1360 / 0.0 vacuolar proton ATPase A1 (.1) Lus10017488 [exp] 97 / 1e-23 AT4G39080 145 / 2e-41 vacuolar proton ATPase A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01496 [poplar] [flax] V_ATPase_I V-type ATPase 116kDa subunit family
Representative CDS sequence Show only first row Show all	>Potri.005G234100.1 pacid=42805181 polypeptide=Potri.005G234100.1.p locus=Potri.005G234100 ID=Potri.005G234100.1.v4.1 annot-version=v4.1 ATGGGCGACGGAAGTTCTGGCCCAACCATGGATCTGATGCGATCGGAGCCGATGCAATTAGTGCAACTTATCATTCCTATTGAATCAGCGTATCGCACAA TTTCTTATCTCGGTGACCTTGGCCTCTTCCAATTCAATGATCTTAACGCGGAAAAGAGCCCGTTCCAGCGGACGTATGCTGCTCAGATTAAAAGATGTGC AGAAATGGCTCGCAAGCTACGTTTCTTCAAGGAGCAAATGAGGAAGGCTGGGTTGTCACCGTCGACGAAGTCTTTAAGAAGTGGCGATATTGATCTGGAT CATTTGGAGGTAACGCTTGGAGAATTGGAATCAGAGCTGATAGAGATAAATTCGAACAATGAAATGCTACAACACACTTATAATGAACTATCAGAATATA AGCTTGTCTTGCAGAAGGCTGGTGAACTTTTCCACTCAGCTCAAAGCATTGTTGCAGCTCAGCAGGGTGAACTTGAATTATATAACACTACTGAACAATC CGTTGAGAGATCATTATTGTTGGAGCAGGAAATGACAATGGATCCATCAAAGCAAGTAAAGCTGGGGTATATCAGTGGTCTTGTTGCAAGAGAAAAATCA ATGGCTTTTGAAAGGATTTTGTTTCGAGCAACTAGGGGCAATGTCTTTTTGAAGCAAACTGTGCTTGAAAATGCTGTTGTTGATCCTGTGTCGGGGGATG AGGTTGAGAAAAATGTATTTGTTGTCTTCTATTCTGGTGAAAGAGCAAAGAACAAGATTCTTAAACTCTGTGAAGGTTTTGGAGCAAACCGCTACCCTTT TACGGAGGACCTAAACAAACAGTTTCAGATTATTTCACAGGTGTCTGGAAGACTTGCAGAGCTTAAAACCACCATAGATGCTGGATTGGCGCACCGGAGC AATTTGTTACAAACCATCGGCTTTGAATTTGAGCAGTGGAATTTTCTGGTGAAGAAGGAAAAATCGATTTACCACATTTTAAACATGCTCAACATGGATG TGACAAAGAAGTGTCTTGTTGCTGAAGGTTGGTGTCCTGTTTTTGCAAAAGATCAGATACAAAATGGATTAAGGCGAGCGACTTTAGACAGCAACTCACA AATTGGAGCCATATTCCATGTTTTGCAGACAAAGGAATCACCACCTACCTTTTTCCAAACAAACAAATTTACTTCTGCTTTTCAAGAAATTGTAGATGCG TACGGGGTTGCCAAGTACCAGGAAGCAAATCCTAGTGTATACACAATTGTCACATTCCCTTTCCTTTTTGCTGTAATGTTTGGTGATTGGGGCCATGGTA TTTGCTTGCTGTTGGCAACATTATATCTTATTATCAGGGAAAAGAAACTTTCCAGTCAGAAGCTTGGAGACATTATGGAAATGGCTTTCAGTGGTCGTTA TGTGATAATGATGATGGGAATTTTTTCAATCTACACGGGGTTGATATACAATGAATTCTTTTCGGTTCCATTTGAACTGTTTGGGCCCTCTGCGTATGGC TGTCGTGACCAGTCTTGCAGGGATGCTTATACTGCTGGTCTAGTTAAGGTCCATGCTACGTATCCATTTGGTTTGGATCCCAAATGGCATGGTAGCCGGA GCGAGTTACCTTTTCTTAACTCAATGAAGATGAAGATGTCAATTTTATTTGGAGTGGCCCAGATGAATCTTGGGATTATAATGAGCTACTTCAATGCAAA GTTCTTTGGAGATAACATAAACATCTGGTACCAATTCGTGCCCCAGATGATTTTCTTAAACAGCTTGTTTGGTTACCTTTCACTCCTCATAATTGTGAAG TGGTGCACCGGTTCACAAGCTGATCTATACCATGTGATGATATACATGTTTCTAAGTCCCACTGATGATTTGGATGACAATCAGCTTTTTATCGGCCAGA AATTTTTTCAGATCTTGTTGCTCCTATCAGCCCTTGCTGCTGTCCCATGGATGATGTTTCCAAAGCCTTTTCTGTTGAAGAAACGACATGAGGAAAGGTT CCAAGGTCAGTCCTATGCACGGCTGGACAGCAATGACTACCCTCCTGAAATTGAGCCGCATTCTGTTTCCCATAACCATGAGGAATTTGAGTTCAGCGAG GTGTTTGTTCACCAACTTATACATACCATAGAGTTTGTTCTTGGAGCAGTGTCGAATACAGCTTCATATTTACGTTTATGGGCCCTCAGTCTGGCTCATT CAGAACTATCGAGTGTATTCTATGACAAGGTCCTTCTTCTAGCATGGGGGTACAACAGCATCATTGCTCGCGGCATTGGATTGTGTGTATTTATATTTGC AACTGTCGGTGTCCTCCTAGTGATGGAAACCCTAAGTGCATTCCTTCATGCCTTGAGGCTTCACTGGGTGGAGTTTCAAAACAAATTTTACGTGGGAGAT GGATACAAATTCTATCCATTTTCATTTGCTTCGCTTGGTCAAGATGATGAATGA
AA sequence Show only first row Show all	>Potri.005G234100.1 pacid=42805181 polypeptide=Potri.005G234100.1.p locus=Potri.005G234100 ID=Potri.005G234100.1.v4.1 annot-version=v4.1 MGDGSSGPTMDLMRSEPMQLVQLIIPIESAYRTISYLGDLGLFQFNDLNAEKSPFQRTYAAQIKRCAEMARKLRFFKEQMRKAGLSPSTKSLRSGDIDLD HLEVTLGELESELIEINSNNEMLQHTYNELSEYKLVLQKAGELFHSAQSIVAAQQGELELYNTTEQSVERSLLLEQEMTMDPSKQVKLGYISGLVAREKS MAFERILFRATRGNVFLKQTVLENAVVDPVSGDEVEKNVFVVFYSGERAKNKILKLCEGFGANRYPFTEDLNKQFQIISQVSGRLAELKTTIDAGLAHRS NLLQTIGFEFEQWNFLVKKEKSIYHILNMLNMDVTKKCLVAEGWCPVFAKDQIQNGLRRATLDSNSQIGAIFHVLQTKESPPTFFQTNKFTSAFQEIVDA YGVAKYQEANPSVYTIVTFPFLFAVMFGDWGHGICLLLATLYLIIREKKLSSQKLGDIMEMAFSGRYVIMMMGIFSIYTGLIYNEFFSVPFELFGPSAYG CRDQSCRDAYTAGLVKVHATYPFGLDPKWHGSRSELPFLNSMKMKMSILFGVAQMNLGIIMSYFNAKFFGDNINIWYQFVPQMIFLNSLFGYLSLLIIVK WCTGSQADLYHVMIYMFLSPTDDLDDNQLFIGQKFFQILLLLSALAAVPWMMFPKPFLLKKRHEERFQGQSYARLDSNDYPPEIEPHSVSHNHEEFEFSE VFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGYNSIIARGIGLCVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYVGD GYKFYPFSFASLGQDDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21410		VHA-A2	vacuolar proton ATPase A2 (.1)		Potri.005G234100 [exp]	0	1
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.005G026900 [exp]	4.47	0.8941
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.016G080500 [exp]	5.65	0.9107
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.017G035800 [exp]	7.07	0.9119
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Potri.010G051500 [exp]	14.66	0.8678	ARP3.2
AT1G76550			Phosphofructokinase family pro...		Potri.005G257800 [exp]	14.69	0.9068
AT5G10840			Endomembrane protein 70 protei...		Potri.018G018400 [exp]	16.12	0.9062
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Potri.008G102300 [exp]	17.14	0.8683
AT3G11130			Clathrin, heavy chain (.1)		Potri.009G073300 [exp]	22.36	0.8835
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Potri.007G121400 [exp]	22.75	0.8888
AT1G68390			Core-2/I-branching beta-1,6-N-...		Potri.010G121800 [exp]	25.98	0.8885

Compare expression of checked genes

Potri.005G234100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.