Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54350 306 / 3e-92 FHA EMB1967 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) AT1G75530 184 / 1e-49 FHA Forkhead-associated (FHA) domain-containing protein (.1) AT1G60700 129 / 5e-31 FHA SMAD/FHA domain-containing protein (.1) AT3G07220 45 / 0.0001 FHA SMAD/FHA domain-containing protein (.1) AT3G07260 44 / 0.0002 FHA SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G028300 [exp] 1350 / 0 AT3G54350 333 / 2e-102 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.005G117900 [exp] 215 / 1e-58 AT3G54350 208 / 5e-57 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.007G016900 [exp] 213 / 6e-58 AT3G54350 206 / 1e-56 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.002G245900 [exp] 44 / 0.0005 AT3G07260 248 / 8e-82 SMAD/FHA domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033185 [exp] 649 / 0 AT3G54350 292 / 4e-87 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10010629 [exp] 635 / 0 AT3G54350 285 / 5e-83 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10028358 [exp] 184 / 2e-48 AT3G54350 211 / 2e-58 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10041808 [exp] 160 / 1e-40 AT3G54350 191 / 1e-51 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10038196 [exp] 44 / 0.0003 AT3G07260 248 / 2e-83 SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13325 [poplar] [flax] MCRS_N N-terminal region of micro-spherule protein
Representative CDS sequence Show only first row Show all	>Potri.005G234300.1 pacid=42803750 polypeptide=Potri.005G234300.1.p locus=Potri.005G234300 ID=Potri.005G234300.1.v4.1 annot-version=v4.1 ATGGGAGCTCTTGGCCCTGTCTCTCCTTGGATGCCAGGGGATGACGTTTTGTTGAGAAATTCTATCGAGGCTGGTGCTTCCTTGGAATCGCTGGCAAAAG GTGCGGTGCAATTTTCTCGAAAATTCACTGTTCGAGAAATACAAGATCGTTGGTATTCTCTCCTTTATGATCCAGTTGTTTCTGCTGAGGCTGCTTTTCA CATGACTGAGTTTGAGCGTTCTACATCAACTCTTCCGTCAAAATACAGCAGAGCTGGAAATTCAAAAGAAAATAAATATTTTTCAGGGAAGAGGAAAACT GAAAGTGTTCATAGTTGTTACTATGCTCTGCGTAAAAGAATTTGCAGTGAACCATTTAACTCCATGGATTTGAGTTTTCTTGTTGGCCCTAATAATAGCA ATTATGCTGGCAATGAATATGAGCAGTTATCCGGACAATGCACGCTTGGAGATCCAGTTACAAATTACTTTGTTCATCAGGAATCTAATTTAGACATCAT GCATCATGCTTTTCCAGAAATTATGGATGGTGATCCTGCCCATGCCTTTGATACTCAATTCCAGAATACATTTCAAGAAGACTATCCAATGGAGCAAGAC AATATACATGAACACATTCCCCGTATACTTGGAGAGGATCTGTCTAACACTGAAAGCAGAACCGTGGTTAGGGAATTCAGTCAACAATTGCCAGTGAATG ATGATCTAGTACATGGGTGCTCCAACTTTGATGGAAAGGAAGTCCTTCAGTCACCAGTTCCAGATCGTGGCTCGTCATTTCAAAATTTGGAGTACCCATC TCCACTTCATGAGATGCCAATGTGGAGAATGGATGAAGTGATTTCAGCGCCTTATATTCCAAATAATCTTAGATTATGTGATAAAGATCTGCACCCGGGA GATACCTTTTCACTTCTTGATGATGGTGATATTAAGAATAGATGTTTGACAGAATATGATGATCTCCATGAAGACTCAAAGTTACAAATGGAAATGCTGA CTGATGTGCCACAAAATTCTTCTCACAGTACAGAAGATTTTCTGGCTGAACTTACCAATTATTTGTCTAATGATGAGGAAGGGTCAGGTGTGGATGTTGA TGGAAAAGATTTCAGCACTGATCCTTACATTGCTTGTCTCAATACAATTTTATTGAGCTCACCTAATAGTGAAAATGAAAAGCACATGCCCAGTGTAACT GAACCAGAATCATCAATATCAGCAGACTGTCTAAAAAATCACTCTGGTGTGTGTCCTGGAAACTTATGGGAGGATAGAGGGTCTCACTACAGTGTTGATG TAGTTTGTAATTCTGAGATGCAGTTTGTTTCATCTACATCAGTTCTAGACCCTCATCCTGAGGTGAAAGATGGGGTTATTTGCTGTGTGCTAAACTCCGA GGACACAGAGATCCCATGCAATGGTGATATACTCTTCCCCACTGAGTGGCACCCAAGTTCAGCTGCCTCCTTAGCATCAAGAAGTTCTCAAGATGCTGGC AAACCAAATTCTTTATTTGTTAAGGAATTAATAAGTAATAAAAAAAGTGGAGTTCCAGTAGTGGTGCATAGGGATCTAGATAATCCTAGACAACCACGCG CATCTTCTCAGATGACCAGATTACAGGTGATGCCAGAGCGTGGTCTACTCCATCCTGCAGGTGATCATGTTTTGAAATTTGAGTTGCCCAGCAGTGAAGC CACTCACAGGGGTGGTGCTGGTTTTTCTTCTGGTGGTTCAACTCAATTTAATTCAGCAGACACTGAGATGGAAACTCTTGTTACTGCTAAAGTGAAGGAA GAAACTACAGATACCCCACTGGTGAAGCATATGAGTCATGATCCAGCAGATTCTTTAACAGAGAAACTGGATTTCGTTTCTGATTGCTTTACATATCCCC AGACAAATGTGTCTGCTGTTAAACAGGCAGAAGATGCTCCAGCTGGAGTTCAAAATCATCAAGCATCACATATGAAAGTGGGCTCTTCAGATATTGCTGC TTCAGAACTAGTGGAAAACCATTCAATATCAGATCCAGCTGAGCCACCTATCCAGAGTGATGATGATGTACCGTATTTTTCAGACATTGAAGCAATGATA CTTGATATGGACTTAGATCCACAGGACCAGGATTTGTATTGCAGTGAGGAAGTCTCAAGATATCAGCATGAGGACATGAAGAGAGCAATCATAAGGCTGG AGCAGGGTGCTCGTTCGTATATGCAAAGATCCATTGCATCTCATGGAGCATTTGCAGTTATGTATGGTCGCCATTCAAAACATTATATTAAGAAGCCTGA GGTATTACTTGGTAGAGCAACAGAAGATGTTACTGTCGACATTGACTTGGGAAGGGAAGGCCGAGCTAATAAAATATCTCGACGGCAGGCCACTATATAT TTGGACAAAAGTGGATCTTTTTATCTGAAAAACCTTGGCAAGTGCTCTCTCTCAGTGAATGACAAGGAAATAGCCCCTGGACGGAGTCTAAGCCTTTCTT CTGGTTGTTTGATTGAGATTAGGGGAATGCCTTTCATATTTGAGATAAACCAAACGTGTGTGAAGCAATATCTAGCCCAGAAGAACCAAACCCAGGAGCA CCTGGTTTGA
AA sequence Show only first row Show all	>Potri.005G234300.1 pacid=42803750 polypeptide=Potri.005G234300.1.p locus=Potri.005G234300 ID=Potri.005G234300.1.v4.1 annot-version=v4.1 MGALGPVSPWMPGDDVLLRNSIEAGASLESLAKGAVQFSRKFTVREIQDRWYSLLYDPVVSAEAAFHMTEFERSTSTLPSKYSRAGNSKENKYFSGKRKT ESVHSCYYALRKRICSEPFNSMDLSFLVGPNNSNYAGNEYEQLSGQCTLGDPVTNYFVHQESNLDIMHHAFPEIMDGDPAHAFDTQFQNTFQEDYPMEQD NIHEHIPRILGEDLSNTESRTVVREFSQQLPVNDDLVHGCSNFDGKEVLQSPVPDRGSSFQNLEYPSPLHEMPMWRMDEVISAPYIPNNLRLCDKDLHPG DTFSLLDDGDIKNRCLTEYDDLHEDSKLQMEMLTDVPQNSSHSTEDFLAELTNYLSNDEEGSGVDVDGKDFSTDPYIACLNTILLSSPNSENEKHMPSVT EPESSISADCLKNHSGVCPGNLWEDRGSHYSVDVVCNSEMQFVSSTSVLDPHPEVKDGVICCVLNSEDTEIPCNGDILFPTEWHPSSAASLASRSSQDAG KPNSLFVKELISNKKSGVPVVVHRDLDNPRQPRASSQMTRLQVMPERGLLHPAGDHVLKFELPSSEATHRGGAGFSSGGSTQFNSADTEMETLVTAKVKE ETTDTPLVKHMSHDPADSLTEKLDFVSDCFTYPQTNVSAVKQAEDAPAGVQNHQASHMKVGSSDIAASELVENHSISDPAEPPIQSDDDVPYFSDIEAMI LDMDLDPQDQDLYCSEEVSRYQHEDMKRAIIRLEQGARSYMQRSIASHGAFAVMYGRHSKHYIKKPEVLLGRATEDVTVDIDLGREGRANKISRRQATIY LDKSGSFYLKNLGKCSLSVNDKEIAPGRSLSLSSGCLIEIRGMPFIFEINQTCVKQYLAQKNQTQEHLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G234300 [exp]	0	1
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.002G028300 [exp]	1.00	0.9265
AT5G05160		REDUCED IN LATE...	REDUCED IN LATERAL GROWTH1, Le...		Potri.001G209700 [exp]	1.41	0.8937
AT5G01260			Carbohydrate-binding-like fold...		Potri.009G044800 [exp]	2.82	0.8808
					Potri.010G192501 [exp]	3.00	0.8629
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.005G225300 [exp]	3.46	0.8706
AT1G09730			Cysteine proteinases superfami...		Potri.017G044000 [exp]	3.87	0.8922
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.007G138700 [exp]	4.24	0.8388
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007300 [exp]	5.00	0.8146
AT4G23840			Leucine-rich repeat (LRR) fami...		Potri.001G092000 [exp]	7.74	0.8461
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Potri.018G118800 [exp]	8.36	0.8702

Compare expression of checked genes

Potri.005G234300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.