Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66330 412 / 3e-142 Leucine-rich repeat (LRR) family protein (.1) AT2G15320 198 / 3e-59 Leucine-rich repeat (LRR) family protein (.1) AT3G59510 145 / 5e-39 Leucine-rich repeat (LRR) family protein (.1) AT1G71400 124 / 2e-30 AtRLP12 receptor like protein 12 (.1) AT3G24240 122 / 1e-29 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT2G26330 119 / 9e-29 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT3G56370 118 / 2e-28 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 118 / 2e-28 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G11010 117 / 6e-28 AtRLP34 receptor like protein 34 (.1) AT4G28650 116 / 1e-27 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117800 [exp] 466 / 3e-163 AT5G66330 506 / 2e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016800 [exp] 446 / 2e-155 AT5G66330 480 / 8e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.009G097100 [exp] 200 / 5e-60 AT2G15320 473 / 2e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028400 [exp] 198 / 1e-58 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028600 [exp] 197 / 1e-58 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.001G301400 [exp] 196 / 1e-58 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.005G235100 [exp] 124 / 2e-30 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.016G137000 [exp] 124 / 3e-30 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G241500 [exp] 123 / 6e-30 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028359 [exp] 342 / 7e-115 AT5G66330 423 / 5e-147 Leucine-rich repeat (LRR) family protein (.1) Lus10019356 [exp] 206 / 1e-61 AT3G59510 377 / 1e-128 Leucine-rich repeat (LRR) family protein (.1) Lus10007417 [exp] 205 / 1e-61 AT3G59510 379 / 2e-129 Leucine-rich repeat (LRR) family protein (.1) Lus10025578 [exp] 182 / 1e-52 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10002822 [exp] 149 / 5e-41 AT2G15320 379 / 1e-130 Leucine-rich repeat (LRR) family protein (.1) Lus10041809 [exp] 120 / 4e-33 AT5G66330 131 / 6e-38 Leucine-rich repeat (LRR) family protein (.1) Lus10023677 [exp] 120 / 5e-29 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10019035 [exp] 120 / 5e-29 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10010949 [exp] 117 / 5e-29 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10019036 [exp] 120 / 6e-29 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G234400.1 pacid=42802357 polypeptide=Potri.005G234400.1.p locus=Potri.005G234400 ID=Potri.005G234400.1.v4.1 annot-version=v4.1 ATGTCAAAAAGCATATGCAATCTCAACCTTTCTCTACAGTATCTCCTTTTGATGATCACTTTACTGTTGCTTAAAGTAGATTCAAGAACGCACCCTGGAG ACATACGAGTGCTCAAGGATCTAAAACATGGGCTGCACCCCGAGTCCATAGCTCCCGGATCTTGCTTGAGCTCGTGGGACTTCTCAGTGGATCCATGCGA CCATATCTTCAGTGACAGATTCACTTGTGGGTTCAGGTGTGACTGGTTTGCTTCTGATTTCTTCCGAGTCACTGAGATCACTCTTGACCCAGTGGGCTAC TCTGGTTTACTCTCTTCAACCACCTGGAATCTGCCTTACTTGCAAACTCTTGATGTATCAGATAACTCCTTCTATGGCTCAATCCCAGACTCACTTTCCA ACCTCACTCGGCTCCGTCGACTGAGTCTCTCAATCAACTTGCTTTCTGGCAAAATGCCCGTCTCTCTCGTGTCTCTAGACCACCTCGAAGAGCTTTATCT TGATAACAACAGTCTCCATGGATCCATACCATCAAACTTCAGCTCACTTGTAAGCTTAAAAAGGCTTGAAATCCAAGAAAACAATCTCTCTGGCGAGTTT CCTGATCTGGGTGCTCTCAAAGACCTGAATTATCTGGATGCTAGTGATAACCAAATATCTGGTGAAGTTCCCTCAACACTACCGGTGTCTCTTGTTGAGC TATCTATGCGAAACAACAACTTACGAGGAAAGCTACCTGTTAGTGTAGGCGATTTGGAGTTCTTACAGGTCTTGGATCTTAGTCACAACAAGTTATCTGG TCCTATTTCATCAGTTCTTTTTGACCATCCTTCTCTTCAACAACTTACCCTTTCCCATAATAATTTCACGTTCCTGCAAGTTCCAGGTACAGTGGGTCTA ACTAGCAACTTAATAGCTCTTGATTCGAGCTACAATGATCTTAGAGGCATATTACCAGGTTTTTTGTGTTCTATGCCGAAGTTGTCATCTTTGTCTCTAG AGAATAACAAGTTTACAGGAATGATACCATCCCAGTATGCTTTGAAAGTGGCTGTTCCTAGGAGCAATTCGTCCTCGTTGGAGAGGCTATTATTAGGTGG GAACTACTTGTTTGGTCCAATTCCAAGTGCTCTGATGGGTTTAAAACCGGGTTCTGCTAATGTGAGTTTGGTGGATAATTGTTTGTATAGGTGTCCTGAT ACCTTCTTCTTTTGTCAAGGTGGGAATCAGAAGTCATTAGTGGACTGTAAGAAGAGATTTGATACCGTGATCCCTTAG
AA sequence Show only first row Show all	>Potri.005G234400.1 pacid=42802357 polypeptide=Potri.005G234400.1.p locus=Potri.005G234400 ID=Potri.005G234400.1.v4.1 annot-version=v4.1 MSKSICNLNLSLQYLLLMITLLLLKVDSRTHPGDIRVLKDLKHGLHPESIAPGSCLSSWDFSVDPCDHIFSDRFTCGFRCDWFASDFFRVTEITLDPVGY SGLLSSTTWNLPYLQTLDVSDNSFYGSIPDSLSNLTRLRRLSLSINLLSGKMPVSLVSLDHLEELYLDNNSLHGSIPSNFSSLVSLKRLEIQENNLSGEF PDLGALKDLNYLDASDNQISGEVPSTLPVSLVELSMRNNNLRGKLPVSVGDLEFLQVLDLSHNKLSGPISSVLFDHPSLQQLTLSHNNFTFLQVPGTVGL TSNLIALDSSYNDLRGILPGFLCSMPKLSSLSLENNKFTGMIPSQYALKVAVPRSNSSSLERLLLGGNYLFGPIPSALMGLKPGSANVSLVDNCLYRCPD TFFFCQGGNQKSLVDCKKRFDTVIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66330			Leucine-rich repeat (LRR) fami...		Potri.005G234400 [exp]	0	1
					Potri.001G425366 [exp]	1.41	0.9491
					Potri.015G098650 [exp]	2.82	0.9407
AT4G37580		UNS2, COP3, HLS...	UNUSUAL SUGAR RESPONSE 2, HOOK...		Potri.001G044100 [exp]	4.58	0.9378
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G170800 [exp]	7.74	0.9352
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G171184 [exp]	11.48	0.9305
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G061700 [exp]	11.83	0.9110
					Potri.001G427901 [exp]	12.04	0.9308
					Potri.001G276304 [exp]	13.56	0.8770
AT5G44440			FAD-binding Berberine family p...		Potri.011G162800 [exp]	16.43	0.8750
AT5G10625			unknown protein		Potri.018G005200 [exp]	16.97	0.8832	Pt-FPF1.1

Compare expression of checked genes

Potri.005G234400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.