Plant FIBer expression Database

Potri.005G234800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G49990 299 / 3e-95 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G028100
[exp]
190 / 2e-57 AT3G49990 84 / 6e-19 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010625
[exp]
358 / 6e-118 AT3G49990 348 / 1e-114 unknown protein
Lus10015447
[exp]
230 / 2e-71 AT3G49990 197 / 8e-60 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04180 LTV Low temperature viability protein
Representative CDS sequence
>Potri.005G234800.1 pacid=42805104 polypeptide=Potri.005G234800.1.p locus=Potri.005G234800 ID=Potri.005G234800.1.v4.1 annot-version=v4.1
ATGGGGAAGAAGAAATTCATCGACAAGAAAAAAGCCGCAACTTTCCAATTATTCGCACGCGATTCCTCCGATCCCAATTTCGACGGCACTGACCGAGTTT
TCGTGCGAGTCGATAACAATCCCTACACAGTAGAAAGCCTCTTGCCCGGCAACAAAATCTCCAGCAACAGCCACTTCGATGACGATCCTAATTCAATTTT
CGCCGACGCGCCGGATGATATGGAGGATGGAGGCAATGGTAGCTTTGGTAATTCCGATAACTTTGGAGGGGTTTTTTTTGGTGAGTCATCCTCGGAGCCT
TTCCCAGAGGATGTTAGGAGAGAGATTTTGGAATTAGGGTTTCCCGATGATGGTTATAATTATTTACTTCACTTGAGAGAGATTAAAAGTACCGTTAATG
GCTCGGGTTTTTTTCAAAATCCTAAAGCCAAGCTTAATCAGCTTCCTCATGATGTTAAGGCTTATGATGCATCGAGACTAAAAGTGTCGGAATTGAAAAG
TGAGGATAGGAATGATAAGTCGATTTACCATGTAGCTTCGAAGAGTGTTGGCGTTAGGGTTCAGAAAGCTGTTGATCCTGAAGTAGCGGCATTGCTGGAT
GACAGTGATTTGTCGCGGTTTGGTTCCGATGTTGAGGACTTGGAGGAGGATTTTGTTGTTCGTGCGAATCTTCCTGAGGGAGAGGATGATTTGGATGCTG
GTGATTTGGTTGAGGGATCGAAGGTGATTAATGAAGGGATCAATGAATATGTTAACTATGGTCGAGAAAATGTAGTGGATCGCAGTGGGGTAGAGAAAGC
AATCAATGCTCCAGTGGAGGTAAGAGGTGATTTCGGAGATGAAAAGCAGCGAGTTCGTCGTCCTTTGGATGAACAATTTGATTTGCTTGAAAGTCAAGAA
TATGGCACTGATGGTGAAGGTGATGAATATGATGGTTACATAGCTGAAGAAGATGAATTTCTAGCAGGCAAGCTTAAACATGCCCTTAATGATCATGCAG
TCGATGACCTGGAACTTGATGAAAAATATGAGGTTCCTGCAGATTTATTGCATGGAAATGATAGACCAAAAGACAAAGAACTCTTAGAGTCGGCAGCTGC
TGTCATTCGCCGCTGTAGAGAATATGGGAAGAAGTATGAAAATGAGGATGAAGATAAAGAGGTTATTATTGAAGAGGAAAGTAGTGATGAGTCAGAAAAG
TGGGATTGTGAGACTATTGTCTCAACATATTCAAATCTTGATAACCACCCTGTTAAAATTGGAGCTCCAGAAACTGCTAGAAAGAAGATGTTGTCCAAAG
CTGTTATTGGGGCTTTAAACGCTTCCAGTCATGTTATTGCCCTTGGAGGAAAAGAAAAGCTTCCTGTAGACTTTTTGCCTCGCAGAAAACCTGCTGCAGA
AAAGGTCAAGGGTGCGCCTAGCTTACAAGTGGAGCAGCAAAAGAGGAAGCAACAGGGCCAGGAGACAAAGGACGAGAAGAAAGAACGAAAGGCTGCTGTA
AAGGAGGAAAAGCGTGAAGCTCGACGCGTGAAAAAGGAGATAAAGGGGCTCTACCGGTGTGAAGCACAGCGTGCTCAGAAAGCTGCTGCTGTAGCAGGCC
CATCTTCCATTCATCTTGTGTAA
AA sequence
>Potri.005G234800.1 pacid=42805104 polypeptide=Potri.005G234800.1.p locus=Potri.005G234800 ID=Potri.005G234800.1.v4.1 annot-version=v4.1
MGKKKFIDKKKAATFQLFARDSSDPNFDGTDRVFVRVDNNPYTVESLLPGNKISSNSHFDDDPNSIFADAPDDMEDGGNGSFGNSDNFGGVFFGESSSEP
FPEDVRREILELGFPDDGYNYLLHLREIKSTVNGSGFFQNPKAKLNQLPHDVKAYDASRLKVSELKSEDRNDKSIYHVASKSVGVRVQKAVDPEVAALLD
DSDLSRFGSDVEDLEEDFVVRANLPEGEDDLDAGDLVEGSKVINEGINEYVNYGRENVVDRSGVEKAINAPVEVRGDFGDEKQRVRRPLDEQFDLLESQE
YGTDGEGDEYDGYIAEEDEFLAGKLKHALNDHAVDDLELDEKYEVPADLLHGNDRPKDKELLESAAAVIRRCREYGKKYENEDEDKEVIIEEESSDESEK
WDCETIVSTYSNLDNHPVKIGAPETARKKMLSKAVIGALNASSHVIALGGKEKLPVDFLPRRKPAAEKVKGAPSLQVEQQKRKQQGQETKDEKKERKAAV
KEEKREARRVKKEIKGLYRCEAQRAQKAAAVAGPSSIHLV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G49990 unknown protein Potri.005G234800
[exp]
0 1
AT5G18440 AtNUFIP nuclear FMRP-interacting prote... Potri.010G246500
[exp]
1.73 0.8668
AT1G18800 NRP2 NAP1-related protein 2 (.1) Potri.015G062700
[exp]
3.00 0.8297
AT4G21130 EMB2271 EMBRYO DEFECTIVE 2271, Transdu... Potri.005G061000
[exp]
3.46 0.8701
AT3G13160 Tetratricopeptide repeat (TPR)... Potri.004G029900
[exp]
3.46 0.8582
AT5G36950 DEGP10 DegP protease 10 (.1) Potri.008G079900
[exp]
4.89 0.8320
AT3G49180 RID3 ROOT INITIATION DEFECTIVE 3, T... Potri.014G027200
[exp]
6.48 0.8416
AT1G64880 Ribosomal protein S5 family pr... Potri.013G076200
[exp]
6.48 0.8337
AT1G23280 MAK16 protein-related (.1) Potri.012G085300
[exp]
7.74 0.8276
AT5G67630 P-loop containing nucleoside t... Potri.016G096800
[exp]
8.66 0.8423
AT4G17520 Hyaluronan / mRNA binding fami... Potri.003G081600
[exp]
10.48 0.8272

Potri.005G234800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.