Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05150 1239 / 0 Calcium-binding tetratricopeptide family protein (.1) AT2G32450 1227 / 0 Calcium-binding tetratricopeptide family protein (.1) AT3G04240 74 / 2e-13 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 61 / 3e-09 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G56290 49 / 1e-05 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT4G37460 47 / 7e-05 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G12400 46 / 9e-05 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT3G54010 45 / 0.0002 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027900 [exp] 1411 / 0 AT1G05150 1226 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.019G025600 [exp] 71 / 3e-12 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 67 / 4e-11 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 64 / 4e-10 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 60 / 6e-09 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G473100 [exp] 49 / 2e-05 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.011G170000 [exp] 48 / 3e-05 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.018G100700 [exp] 45 / 0.0001 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.001G119500 [exp] 45 / 0.0002 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033182 [exp] 1277 / 0 AT2G32450 1323 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10010627 [exp] 1129 / 0 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10030122 [exp] 89 / 2e-21 AT1G05150 91 / 3e-23 Calcium-binding tetratricopeptide family protein (.1) Lus10003576 [exp] 81 / 3e-15 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 76 / 1e-13 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 75 / 2e-13 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038571 [exp] 61 / 1e-11 AT2G32450 62 / 2e-13 Calcium-binding tetratricopeptide family protein (.1) Lus10021336 [exp] 64 / 3e-10 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 56 / 2e-07 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027124 [exp] 48 / 3e-05 AT5G56290 1003 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13202 [poplar] [flax] EF-hand_5 EF hand CL0020 [poplar] [flax] TPR PF13371 [poplar] [flax] TPR_9 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.005G234900.1 pacid=42803920 polypeptide=Potri.005G234900.1.p locus=Potri.005G234900 ID=Potri.005G234900.1.v4.1 annot-version=v4.1 ATGACGACAAGAGGGACTAGATCAGAGAAAGTGAAGAGGATTTTCCAACAATTTGATGTCAATCGTGATGGAGGTCTCAGCAGAGATGAAATGGCAGCTT TGGTGGTGGCTGTGAACCCTAGAGTTAAATTTAGTGACGAGCAAATCAATGCGATTCTTGACGAAGTTTTCCGCACGTACGGAGAGTTTATTGATGGCGA CAAAGGGTTAACCTATGATGGTTTATTGCGTACCTATGATGATGGAGCTGGTGACGTGGACCGTGATTTTGATGCGCTTGAATTGGAATTGAATGATGAT AATAAAGGGAGCACGATCGAGGCGGAGGCGTCGTCGTCGTCAATTGTGGATGAGAGGGTTATAGAGTCGCAGAAGAAGCAGAGGACTGCTGCGTGGGCGG TTTCGCCTAATCACGGGATTGTTTTTGATGATACGTGGAAAATTGTTGATGATTTGGAGATTTTGATTAAGAGATTGAAAGCGAAGCAAGCTAAAGATGG GAAATTTAAAGCTGATAATTTTGATGCGTTTTCTGATGCTGGGTGGTCAAGGGAATTGGGGCCATCTTCGGAGATCTCGGAAAAGAGGGTGTTTTGGGAA GAGTCTGGGAATGATTACGCGGCTTTCGTGAGAGAATTGGGGGCTTTGAGGAGCAGAGCTGACGGGGCGAGATCGAGAGAAGAGGCATTTGATGGGCATA TGGCAATTGGGAGGGTTTTGTACGATCATCAGTTGTTTAAGGAGGCGCTGGTTAGTTTTAAGAGAGCTTGTGAGTTGCAGCCTGTGGATGTTAGGCCACA CTTTAGAGCTGGGAATTGTTTATATGTGCTTGGAAGGTATAAAGAGGCTAAAGAGGAGTTTTTGTTGGCGTTGGAGGCAGCAGAGGCAGGTGGGAATCAA TGGGGTTATTTGCTTCCCCAGATTTATGTGAATCTCGGGATTGCGCTGGAAGGTGAAGGTATGGTTTTAAGTGCTTGTGAGTATTATAGAGAAGCTGCTA TTCTCTGCCCAACCCATTTTAGAGCTTTGAAACTTTTAGGTAGTGCTCTGTTTGGGGTAGGGGAATATAAGGCTGCTGTTAAGGCCTTAGAAGAGGCTAT CTTTATGAAACCAGATTATGCTGATGCTCATTGTGATTTAGCTTCTGCTTTACATGCCATGGGTGAGGATGAGAAGGCAATAGAGGTGTTTCAAAAGGCA ATTGATTTGAAACCTGGCCATGTGGATGCTTTGTATAATTTAGGTGGGCTGTACATGGATCTGGGTAGGTTTCAAAGAGCTTCCGAGATGTATACTAGGG TTTTAGCTGTCTGGCCAAACCACTGGCGGGCACAACTTAATAAGGCTGTCTCGTTGTTGGGGGCTGGGGAGACTGAGGAAGCTAAGAAAGCTTTGAAGGA AGCATTGAAATTGACAAATAGGGTTGAATTGCATGATGCAATATCTCATTTGAAGCAGATACAGAAGAAGAAAGTGAAGGGTAATGAAGGTGCCAATGGG GAGGGAGTGTTTGTCATTGTGGAACCTTCAAAATTTAAGACGGTGAATGGCAAAACTACATTGAGGCAGGACTTAGCTATTGCTCTTCAAATCAGGGTGT TTCAGAGGATTACCAGGTTAAGTCGATGTGATGTGGAACTTTTGAAGAAGGAAATGAGTGAAAATGATGTACCAATGTCTTATTCTGGTGGTGGTGTTCC TGAGAAATCAATACGCAAACCTAACTTAGAGGAAATTCTGCGGCGGTTGCTTAATTTCCTGAAGCCTGAAACCTTCCAGGGGGCTGTCAAGGTAATAAAC GAGAAGATCCTCTCTGTTTTGGACGATACAGGCTCAGGCAGGGTGGATTTAGGTATGATCTATGCCGTTCTTGCTCCCATTTGCAGTGGCACTCCTGATA AGCGAAAAAGGGTTGCTTTTGATGCACTTTTATGGCGTCCTGTGAATGAAGGTGGTTCACAGATTAAAAGGGCTGATGCTGTTCATTACATCAATTTACT GAGGGCTATTTATATTCCTTCTCATGGGGTTAGTGAAATGCTAGAGCTTCATGGAGAAGAAGATTCTTCAATGGTGTCTTTCAAGGAGTTTCTTGTGATG TTCGATGATCCTGATTGGGGCTTTGGTATTATGTCAACTCTGGTGAAGCTCGAATCTGGGGACAGGAACCGCCATGGAAATTGTGTTTGCTCAGTTTGCC GCTACCCAATTATTGGGTCCCGCTTCAAGGAGATAAAATCTCATTTTAGTCTATGTAGCCAGTGTTACAGCGAGGGGAAGGTGTCTCCTGCATTTAAGCA GGATGATTACAAATTCAAAGAGTATGGAAGTGAGGCTGAAGCGATGAAAGATAAGTGCACATGTCTCCCTTTGCAATCTCGTAATGATCGGTAA
AA sequence Show only first row Show all	>Potri.005G234900.1 pacid=42803920 polypeptide=Potri.005G234900.1.p locus=Potri.005G234900 ID=Potri.005G234900.1.v4.1 annot-version=v4.1 MTTRGTRSEKVKRIFQQFDVNRDGGLSRDEMAALVVAVNPRVKFSDEQINAILDEVFRTYGEFIDGDKGLTYDGLLRTYDDGAGDVDRDFDALELELNDD NKGSTIEAEASSSSIVDERVIESQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILIKRLKAKQAKDGKFKADNFDAFSDAGWSRELGPSSEISEKRVFWE ESGNDYAAFVRELGALRSRADGARSREEAFDGHMAIGRVLYDHQLFKEALVSFKRACELQPVDVRPHFRAGNCLYVLGRYKEAKEEFLLALEAAEAGGNQ WGYLLPQIYVNLGIALEGEGMVLSACEYYREAAILCPTHFRALKLLGSALFGVGEYKAAVKALEEAIFMKPDYADAHCDLASALHAMGEDEKAIEVFQKA IDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKKALKEALKLTNRVELHDAISHLKQIQKKKVKGNEGANG EGVFVIVEPSKFKTVNGKTTLRQDLAIALQIRVFQRITRLSRCDVELLKKEMSENDVPMSYSGGGVPEKSIRKPNLEEILRRLLNFLKPETFQGAVKVIN EKILSVLDDTGSGRVDLGMIYAVLAPICSGTPDKRKRVAFDALLWRPVNEGGSQIKRADAVHYINLLRAIYIPSHGVSEMLELHGEEDSSMVSFKEFLVM FDDPDWGFGIMSTLVKLESGDRNRHGNCVCSVCRYPIIGSRFKEIKSHFSLCSQCYSEGKVSPAFKQDDYKFKEYGSEAEAMKDKCTCLPLQSRNDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05150			Calcium-binding tetratricopept...		Potri.005G234900 [exp]	0	1
AT1G05150			Calcium-binding tetratricopept...		Potri.002G027900 [exp]	2.44	0.8071
AT4G33740			unknown protein		Potri.001G288800 [exp]	21.11	0.7721
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.004G217600 [exp]	28.08	0.7712
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.005G120700 [exp]	28.70	0.7663
AT3G05900			neurofilament protein-related ...		Potri.005G001700 [exp]	32.61	0.6143
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Potri.018G023500 [exp]	33.46	0.7617
AT3G05670			RING/U-box protein (.1)		Potri.013G011400 [exp]	35.14	0.7642
AT4G14920			Acyl-CoA N-acyltransferase wit...		Potri.008G152600 [exp]	39.00	0.7573
AT5G43490			unknown protein		Potri.017G058600 [exp]	40.02	0.7641
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.007G022600 [exp]	43.12	0.7566

Compare expression of checked genes

Potri.005G234900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.