Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42480 883 / 0 ARC6 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) AT3G19180 105 / 3e-23 ATCDP1, ARC6H, PARC6 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027501 [exp] 446 / 1e-152 AT5G42480 283 / 1e-89 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Potri.015G028101 [exp] 107 / 2e-23 AT3G19180 857 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.012G035900 [exp] 104 / 1e-22 AT3G19180 843 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.012G036100 [exp] 76 / 3e-15 AT3G19180 297 / 4e-96 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033922 [exp] 883 / 0 AT5G42480 827 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Lus10024309 [exp] 864 / 0 AT5G42480 814 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Lus10042298 [exp] 108 / 5e-24 AT3G19180 635 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Lus10026359 [exp] 106 / 2e-23 AT3G19180 752 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13355 [poplar] [flax] DUF4101 Protein of unknown function (DUF4101)
Representative CDS sequence Show only first row Show all	>Potri.005G235000.4 pacid=42804118 polypeptide=Potri.005G235000.4.p locus=Potri.005G235000 ID=Potri.005G235000.4.v4.1 annot-version=v4.1 ATGGAAGCCTTGAGACATGTCGGCATTGGCCTTTGCACTCCCAAACTATTTCCTCCTTTTAAAAAACCCTCAAAAGTAAGCACCACAATCACCTGCTCCG CCAGCAAATGGGCTGATCGCCTCCTCAGTGATTTCCAATTCTTCACCTCCACCGACACCTCCTCCTCCGACCTCCTCCACCACCCTCTTTCCTCTTCCAC CGCCACTCTCGCTCCTCCTCCCCCCCTCTCACCTCCCGAACGCTATGTCTCCACCCCTCTCCACTTCTACCAGGTTTTAGGAGCTGAAACACATTTCCTT GGAGATGGAATAAAGAGAGCTTATGAAGCTAGGGTTTCTAAACCACCACAATACGGTTTCAGTCAAGACGCTCTGGTTAGCCGCAGGCAAATTCTCCAAG CTGCCTGTGAAACCCTAGCTGATCCTGCCTCTAGAAGAGATTACAATCAAGGCCTTATCGATGACGAGACTGATACCATCGTCACTCAAGTTCCCTGGGA CAAGGTTCCAGGGGCATTGTGTGTATTACAAGAAGCAGGGGAGACTGAGGTGGTGCTTCAAATTGGAGAGAGTTTGTTAAGGGAGAGATTGCCGAAGTCG TTTAAGCAAGATGTGGTGCTGGCAATGGTGCTTGCGTATGTGGATATGTCGAGGGATGCTATGGCGTTGGATCCGCCAGATTTTATTAGAGGGCGTGAGG TGCTAGAGCGGGCTTTGAAGCTTCTGCAGGAGGAAGGTGCCAGTAGCCTTGCACCTGATTTACAAGCACAGATTGATGAGACATTGGAAGAGATTACCCC TAGATCTGTCCTCGAACTTCTTGCATTGCCCCTCAGTGAAGAATACCGAACAAGAAGGGAGGAGGGTCTCCAAGGAGTGCGGAACACATTATGGGCTGTT GGAGGAGGAGGAGCAGCACCGGTTGCTGGAGGATTTACCCGGGAAGATTTCATGAATGAGGCCTTCTTACGTATGACAGCAGCTGAGCAGGTTGATCTGT TCGTCACCACGCCAAGTAATATCCCGGCTCAAAATTTTGAAGTTTATGGAGTGGCACTTGCCCTTGTTGCCCAAGCTTTCATTGGTAAAAAGCCTCATCT CATCACAGATGCTGATAACCTATTCGGACAGCTTCAGCAGATTAAGGTAACAAATCAAGGGAGTCTTGTTCCTGTCTTTGGTTCCATGGAAAACCGTGAT ATTGACTTTGGTTTGGAGAGGGGTCTTTGTTCACTGCTTGTAGGCGAGCTTGATGAATGTTGTAAATGGATGGGTTTAGACAGTGATAACTCTCCTTACA GAAACCCACCTATTTTTGATTTTATCATGGAAAATTCCAAGGATGATGATGACAGCAATCTTCCTGGGCTTTGTAAATTGTTGGAGACATGGTTGATGGA GGTGGTATTTCCTAGATTTAGGGACACCAAAGACAGAGAATTCAAGCTTGGAGATTATTATGATGACCCCACTGTCTTGAGATACCTAGAAAGGCAGGAA GGAGGTGGCCGTTCACCATTGGCTGCAGCAGCAGCCATAGTGAGAATTGGGGCTGAGGCTACTGCTGTTATTGATCATGTGAAGGCTAGTGCAATTCAGG CATTGCAGAAGGTGTTTCCTCTTGGTCACAAGGACATGGGTGCAGAATTCCATGAAAATGATGGGATCAATTCTGTCCTTTCTGCTGTAGAAACGGAAAA GCCTTTTGAAAGTCTTGGTCTAGAGAATCCTGAAGAAATATATTCTGATGAAGTACCTGAAGAAGAATTAATTACTGAAAAAATAAAAGATGCCAGTATC AAAATCATGTGTGCTGGTGTGGCTATTGGACTGCTGACTTTAGCTGGCCTGAAGTATTTTCCTCCTAGGACTGGCTCCTTCATTCGACAGAAAGAAATTG GTTCGGCAATGGCATCTGACACCATCAATTTGAATTCAGCAGTAGATGAACAAATTTCCGAGGAATTACCCAGAATGGATGCAAGGTTTGCAGAGGATAT AGTTCGCAAGTGGCAAAACATTAAATCTCAGGCTTTTGGACCTGATCACTGCCTGGCAAAATTGCCAGAGGTTTTGGATAGTCAGATGTTGAAAATATGG ACAGACCGCGCGGCCGAAATTGCACATCTTGGTTGGGTATACGAGTATATGCTGTTGGACCTGACTATTGACAGTGTGACTGTATCTGTGGATGGACTAA GTGCTGTAGTAGAAGCAACACTCAAAGAGTCAACTCGCTTAACTGACGAGGTTCATCCAGAGAACAATGCCTCAAATGTCAAAACCTACACGACAAGATA TGAGCTATCATGTTCCAATTCGGGATGGAAAATAACTGAAGGAGCAATTATGATGTAA
AA sequence Show only first row Show all	>Potri.005G235000.4 pacid=42804118 polypeptide=Potri.005G235000.4.p locus=Potri.005G235000 ID=Potri.005G235000.4.v4.1 annot-version=v4.1 MEALRHVGIGLCTPKLFPPFKKPSKVSTTITCSASKWADRLLSDFQFFTSTDTSSSDLLHHPLSSSTATLAPPPPLSPPERYVSTPLHFYQVLGAETHFL GDGIKRAYEARVSKPPQYGFSQDALVSRRQILQAACETLADPASRRDYNQGLIDDETDTIVTQVPWDKVPGALCVLQEAGETEVVLQIGESLLRERLPKS FKQDVVLAMVLAYVDMSRDAMALDPPDFIRGREVLERALKLLQEEGASSLAPDLQAQIDETLEEITPRSVLELLALPLSEEYRTRREEGLQGVRNTLWAV GGGGAAPVAGGFTREDFMNEAFLRMTAAEQVDLFVTTPSNIPAQNFEVYGVALALVAQAFIGKKPHLITDADNLFGQLQQIKVTNQGSLVPVFGSMENRD IDFGLERGLCSLLVGELDECCKWMGLDSDNSPYRNPPIFDFIMENSKDDDDSNLPGLCKLLETWLMEVVFPRFRDTKDREFKLGDYYDDPTVLRYLERQE GGGRSPLAAAAAIVRIGAEATAVIDHVKASAIQALQKVFPLGHKDMGAEFHENDGINSVLSAVETEKPFESLGLENPEEIYSDEVPEEELITEKIKDASI KIMCAGVAIGLLTLAGLKYFPPRTGSFIRQKEIGSAMASDTINLNSAVDEQISEELPRMDARFAEDIVRKWQNIKSQAFGPDHCLAKLPEVLDSQMLKIW TDRAAEIAHLGWVYEYMLLDLTIDSVTVSVDGLSAVVEATLKESTRLTDEVHPENNASNVKTYTTRYELSCSNSGWKITEGAIMM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Potri.005G235000 [exp]	0	1
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.008G098700 [exp]	3.74	0.9454
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Potri.005G082400 [exp]	7.74	0.9403
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.003G191000 [exp]	8.48	0.9488
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.003G089700 [exp]	10.24	0.9446
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.003G058300 [exp]	11.22	0.9359
AT2G02740		WHY3, ATWHY3, P...	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.010G092500 [exp]	11.31	0.9348
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.004G013300 [exp]	15.90	0.9340
AT1G59840		CCB4	cofactor assembly of complex C...		Potri.008G191900 [exp]	16.58	0.9420
AT2G35490			Plastid-lipid associated prote...		Potri.003G095900 [exp]	16.61	0.9421
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	19.49	0.9286

Compare expression of checked genes

Potri.005G235000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.