Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75640 1231 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT4G36180 1204 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 408 / 3e-124 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 410 / 5e-124 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 396 / 1e-118 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 394 / 8e-118 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G56040 390 / 2e-117 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G08850 372 / 3e-111 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G28440 354 / 3e-105 HSL1 HAESA-like 1 (.1) AT3G49670 345 / 6e-102 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027400 [exp] 1669 / 0 AT1G75640 1275 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G014700 [exp] 1268 / 0 AT4G36180 1298 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G065400 [exp] 421 / 2e-128 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 417 / 1e-127 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 404 / 1e-122 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G080800 [exp] 396 / 2e-119 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.019G025500 [exp] 394 / 7e-119 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G174900 [exp] 383 / 7e-115 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G075000 [exp] 385 / 1e-114 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033924 [exp] 1342 / 0 AT1G75640 1332 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033926 [exp] 1340 / 0 AT1G75640 1348 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10042177 [exp] 1274 / 0 AT4G36180 1253 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10004266 [exp] 880 / 0 AT4G36180 1061 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10023323 [exp] 440 / 4e-135 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039030 [exp] 395 / 7e-119 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10036251 [exp] 390 / 3e-116 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10000509 [exp] 376 / 2e-112 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10038392 [exp] 375 / 3e-111 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10017782 [exp] 371 / 1e-110 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G235100.1 pacid=42804130 polypeptide=Potri.005G235100.1.p locus=Potri.005G235100 ID=Potri.005G235100.1.v4.1 annot-version=v4.1 ATGTCAAGAACAACGGCTATTTCTCTCCTCGTCATTTTTGCAACCGTAATAACTTGCTGTCAGAGCGACGTCGTTTCATTGTCCGAGGAGATCCAAGCTT TGACGTCTTTCAAGCTAAATCTCAATGATCCACTAGGAGCACTAGACGGCTGGGATGCATCCACGCCATCAGCTCCCTGTGACTGGCGTGGCATTGTCTG TTACAATAACCGAGTTCATGAACTCCGGTTACCTCGTTTATACCTCAGTGGCCAGCTCAGTGACCAGCTCTCTAACTTACGCCAGTTGCGTAAGTTAAGT CTCCACTCTAACAACTTCAATGGCTCCATCCCTCCTTCACTCTCTCAATGCTCTCTCTTACGCGCCGTTTACTTACAGTATAACTCACTCTCCGGTAACC TTCCGTCAACCATCGTTAACCTCACTAACCTTCAAGTCCTCAACGTTGCTCACAACTTCCTTAACGGAAAAATCTCTGGTGACATTTCATTCTCTCTCCG TTACCTCGATGTCTCATCAAATTCGTTCTCTGGTGAGATACCGGGGAACTTCTCATCAAAATCTCAGCTTCAACTAATCAATTTATCGTACAATAAATTC TCCGGTGAAATTCCGGCGAGAATTGGGCAACTTCAAGAGCTTGAGTACTTATGGCTGGATTCTAATCAGTTGCACGGTACTTTACCATCAGCAGTAGCAA ATTGTTCATCACTTATTCATTTAAGCACTGGAGACAATTCACTTAAAGGAATGGTACCGGCAAGTATCGGTTCAATTCCTAAACTCGAAGTGCTTTCTTT ATCGCGGAATGAACTCTCTGGTACGATTCCGGCAAGTATTATCTGTGGAGTTTCGCTGAGGATTGTGAAGCTTGGATTTAATGCATTCACGGGAATTGAT CCGCCGTCAAATGGAAGTTGTTTTAGTAATTTGGAGGTTTTAGATATTCACGAGAATCACATTACAGGCGTCTTTCCGTCTTGGTTGACTGGTTTGACTA CGGTTAGAGTTGTTGATTTTTCGACAAATTTCTTTTCGGGGAGTTTGCCGGGTGGTATCGGTAATCTTTGGAGGTTAGAGGAGGTTAGAGTGGCTAATAA TTCATTAACAGGTGATATTCCGAATAAGATTGTAAAATGTAGTTCTTTACAAGTTCTTGATCTTGAAGGGAATCGGTTTGATGGTCAGATTCCTTTGTTT TTGAGTGAATTAAGGAGGTTGAAGCTGTTATCTTTAGGAAGGAATTTGTTTTCGGGTTCGATTCCTGCGAGTTTTGGTGGTCTTTTCGAGCTTGAAACGT TGAAATTGGAGAGTAATAATTTGAGTGGAAATCTGCCTGAGGAGATAATGAAGTTGACTAATTTGAGCACTTTGAGTTTGAGTTTTAATAAGTTGTCTGG GGAGATTCCTTACAGTATAGGAGAGTTGAAGGGTTTGATGGTTTTGAACCTGAGTGGTTGTGGGTTTTCGGGGAGGATTCCGGGTAGTATTGGGAGTTTG TTGAAGCTTACAACTTTGGATTTGAGCAAGCAGAATTTGTCTGGTGAGTTGCCGATTGAGATTTTTGGGTTGCCAAGTTTGCAAGTTGTTGCTTTGGAAG AGAATAAGTTATCTGGGGTTGTTCCTGAAGGTTTTAGCAGCCTAGTTAGTCTACAGTACTTGAATCTCACATCTAATTTTTTCACTGGTGAGATTCCAGC AAATTATGGATTTCTTACGTCATTGGTTGCTCTTTCATTGTCTCGGAATTATATTTCGGGGATGATCCCAGCTGAGCTCGGTAACTGTTCAAGTCTTGAA ATGCTCGAACTGCGTTTTAATCATTTGAGGGGCAGCATTCCAGGTGATATCTCTCGCTTGTCTCGTTTAAAGAGGCTTGATTTGGGTGAGGATGCTTTAA CTGGTGAAATCCCTGAGGATATTCATAGATGTTCCTCTTTGAGTTCTCTGTTGTTGGATCTTAATCACCTTTCAGGCCGTATACCGGAGTCCTTGTCAAA ATTATCAAACCTCGCAGTTTTGAGTCTTTCCTCCAACAGCTTGAATGGGACTATTCCTGCAAATCTTTCTCACATCCCTAGTTTGAGATACTTGAATTTA TCAAGGAACAATCTTGAAGGAGAGATTCCAAGATTGCTGGGTTCTCGGTTCAATGATCCTTCTGTGTTTGCTATGAATCGGGAATTATGTGGGAAGCCAC TGGATAGAGAATGTGCAAATGTTAGGAACAGAAAGAGGAAGAAGTTGATTCTATTCATTGGCGTGCCTATAGCTGCAACCGTCCTTTTAGCACTGTGTTG CTGTGCATACATTTACAGTCTTTTACGCTGGCGCAAGAGGCTTAGAGATGGGGTAACTGGTGAAAAGAAGCGAAGCCCAGCAAGTGCAAGTTCAGGGGCA GACAGAAGTCGTGGCAGCGGAGAAAATGGAGGGCCAAAACTTGTGATGTTCAATAACAAGATAACATATGCAGAGACATTGGAGGCAACCAGACAATTTG ATGAGGACAATGTGTTAAGCAGGGGAAGATATGGACTTGTATTCAAGGCTTCATATCAAGATGGAATGGTGCTCTCAGTCCGTCGCCTCCCAGATGGATC AATCAGCGAAGGCAACTTTCGTAAAGAAGCAGAGTCATTAGACAAGGTGAAGCATCGGAACCTAACAGTTTTACGTGGCTATTATGCAGGACCACCTGAT GTAAGGCTACTTGTCTATGATTACATGCCAAATGGAAACCTGGCCACTCTCCTTCAAGAAGCCTCACACCAAGACGGGCATGTTCTAAACTGGCCAATGC GTCATTTAATTGCTCTCGGCATTGCTCGTGGACTAGCGTTCTTGCATTCACTCTCTTTGGTTCATGGCGATCTCAAGCCACAAAATGTCCTTTTTGACGC TGATTTTGAAGCACATTTATCTGAATTTGGGCTCGATAAATTAACCACAGCAACACCAGCAGAAGCCTCCTCATCTTCCACCCCAGTTGGCTCACTAGGC TATATATCACCAGAAGTAGCATTAACAGGACAACCAACAAAGGAAGCTGATGTGTACAGTTTTGGGATTGTATTGTTAGAAATTCTAACAGGAAAGAAAC CAGTTATGTTCACACAAGATGAAGACATCGTCAAGTGGGTGAAAAAGCAATTGCAAAGAGGCCAAATATCAGAACTACTCGAACCCGGATTGCTTGAGTT GGACCCCGAGTCATCAGAATGGGAAGAGTTCTTGTTGGGAATCAAAGTTGGTCTTCTTTGCACAGCACCTGATCCACTTGATAGACCATCAATGGCTGAT ATTGTTTTCATGCTTGAAGGTTGTAGGGCTGGACCGGATATTCCATCCTCAGCCGATCCCACCTCACTACCTTCTCCAACTTGA
AA sequence Show only first row Show all	>Potri.005G235100.1 pacid=42804130 polypeptide=Potri.005G235100.1.p locus=Potri.005G235100 ID=Potri.005G235100.1.v4.1 annot-version=v4.1 MSRTTAISLLVIFATVITCCQSDVVSLSEEIQALTSFKLNLNDPLGALDGWDASTPSAPCDWRGIVCYNNRVHELRLPRLYLSGQLSDQLSNLRQLRKLS LHSNNFNGSIPPSLSQCSLLRAVYLQYNSLSGNLPSTIVNLTNLQVLNVAHNFLNGKISGDISFSLRYLDVSSNSFSGEIPGNFSSKSQLQLINLSYNKF SGEIPARIGQLQELEYLWLDSNQLHGTLPSAVANCSSLIHLSTGDNSLKGMVPASIGSIPKLEVLSLSRNELSGTIPASIICGVSLRIVKLGFNAFTGID PPSNGSCFSNLEVLDIHENHITGVFPSWLTGLTTVRVVDFSTNFFSGSLPGGIGNLWRLEEVRVANNSLTGDIPNKIVKCSSLQVLDLEGNRFDGQIPLF LSELRRLKLLSLGRNLFSGSIPASFGGLFELETLKLESNNLSGNLPEEIMKLTNLSTLSLSFNKLSGEIPYSIGELKGLMVLNLSGCGFSGRIPGSIGSL LKLTTLDLSKQNLSGELPIEIFGLPSLQVVALEENKLSGVVPEGFSSLVSLQYLNLTSNFFTGEIPANYGFLTSLVALSLSRNYISGMIPAELGNCSSLE MLELRFNHLRGSIPGDISRLSRLKRLDLGEDALTGEIPEDIHRCSSLSSLLLDLNHLSGRIPESLSKLSNLAVLSLSSNSLNGTIPANLSHIPSLRYLNL SRNNLEGEIPRLLGSRFNDPSVFAMNRELCGKPLDRECANVRNRKRKKLILFIGVPIAATVLLALCCCAYIYSLLRWRKRLRDGVTGEKKRSPASASSGA DRSRGSGENGGPKLVMFNNKITYAETLEATRQFDEDNVLSRGRYGLVFKASYQDGMVLSVRRLPDGSISEGNFRKEAESLDKVKHRNLTVLRGYYAGPPD VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSLSLVHGDLKPQNVLFDADFEAHLSEFGLDKLTTATPAEASSSSTPVGSLG YISPEVALTGQPTKEADVYSFGIVLLEILTGKKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGIKVGLLCTAPDPLDRPSMAD IVFMLEGCRAGPDIPSSADPTSLPSPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75640			Leucine-rich receptor-like pro...		Potri.005G235100 [exp]	0	1
AT1G67590			Remorin family protein (.1.2)		Potri.010G056800 [exp]	2.00	0.8630
AT4G23740			Leucine-rich repeat protein ki...		Potri.015G023500 [exp]	4.58	0.7960
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.015G039000 [exp]	6.24	0.8675
AT5G10530			Concanavalin A-like lectin pro...		Potri.007G004400 [exp]	9.21	0.8304
AT2G23440			unknown protein		Potri.007G041400 [exp]	9.79	0.8329
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Potri.010G051100 [exp]	12.36	0.8088
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.019G079200 [exp]	12.36	0.8213
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.015G005900 [exp]	16.34	0.8378
AT5G65360			Histone superfamily protein (....		Potri.003G207700 [exp]	16.73	0.8156
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G012800 [exp]	17.34	0.8234

Compare expression of checked genes

Potri.005G235100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.