Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24160 645 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G64670 59 / 2e-09 CED1, BDG1 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1, BODYGUARD1, alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 59 / 2e-09 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G41900 57 / 2e-08 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 55 / 5e-08 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 52 / 4e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G78210 50 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1) AT5G19850 50 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1) AT1G77420 47 / 1e-05 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 46 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027300 [exp] 701 / 0 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G063900 [exp] 56 / 2e-08 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G121000 [exp] 56 / 2e-08 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G147400 [exp] 53 / 2e-07 AT4G24140 615 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G083400 [exp] 48 / 7e-06 AT4G24140 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G062700 [exp] 48 / 7e-06 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G155500 [exp] 47 / 1e-05 AT3G24420 331 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 46 / 3e-05 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G219700 [exp] 45 / 4e-05 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024310 [exp] 657 / 0 AT4G24160 663 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033927 [exp] 180 / 2e-54 AT4G24160 191 / 8e-60 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028315 [exp] 59 / 2e-09 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10023147 [exp] 55 / 5e-08 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 52 / 3e-07 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10002142 [exp] 50 / 2e-06 AT4G12830 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10033234 [exp] 50 / 3e-06 AT4G24140 587 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 49 / 3e-06 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10008266 [exp] 49 / 4e-06 AT4G24140 582 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041763 [exp] 49 / 4e-06 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.005G235200.1 pacid=42804249 polypeptide=Potri.005G235200.1.p locus=Potri.005G235200 ID=Potri.005G235200.1.v4.1 annot-version=v4.1 ATGAACCTGTTTCGTTCACGCGTCTCAAGCTCAATAGTATCTACCATGGGCGAAGAGCAAGGATCCTCTGCTTCCGCTTCCACCGCAACATCATCATCAC GGGCAAAAACAAGATCTACATGGCCCTCTATTCTTCGCTGGATCCCCACTTCCACCGATCACGTCATCGGCGCCGAAAAACGCCTTTTCTCTCTAGTGAA GACTCCGTACGTGGTAGAGCAAGTGAATATTGGTTCGGGTCCACCAGGGTCAAAGACTCGGTGGTTTCGATCTAAGAGTGATGAGCCTAGGTTTATCAAT ACGGTGACTTTTCAAAGCAAAGAGGACTCTCCTACGCTTGTAATGGTCCATGGATATGGTGCTTCTCAAGGTTTCTTCTTCAGGAATTTTGATGCTCTTG CTAGTCGTTTCAAGATCATTGCTATTGATCAGCTTGGTTGGGGTGGATCAAGTAGACCTGACTTTACCTGCAAAAGCACTGAAGAAACTGAGGCGTGGTT TATTGACTCCTTTGAGGAATGGCGAAAAGCAAAGAACCTCAGTAACTTCATATTGCTTGGGCATTCATTTGGAGGGTATGTTGCGGCTAAATATGCACTC AAGCATCCCGAGCATGTTAAGCAGTTGATTTTAGTGGGATCTGCTGGATTTTCATCAGAATCAGATTCCAAGTCTGAGTGGCTCGCCCAATTTAGGGCAA CTTGGAAAGGAGCCATTTTGAATCATTTGTGGGAGTCTAATTTTACTCCTCAGAAGGTTGTCAGAGGGTTGGGTCCTTGGGGTCCTGGTCTGGTACGTCG CTACACAACTGCTAGATTTGGTGCATATTCAACCGGAGTAGTATTGGCTGAGGAGGAGTCCAAATTGCTAACAGATTATGTGTATCATACTTTAGCAGCC AAAGCTAGTGGAGAGCTATGCTTGAAATTTATATTTTCTTTTGGAGCATATGCACGGAAGCCCCTTTTACAGAGTGCATCAGAATGGAAAGTGCCAACCA CTTTCATATATGGCTTCGAAGATTGGATGAGCTACGAAGGTGCCCAACAAGCTCGCCAGCATATGAAGGTTCCATGCGAGATCATTCGGGTTCCACAGGG CGGGCACTTTGTATTCATAGACAACCCAACTGCGTTCCATTCAGCTGTGTTTTATGCTTGTCGGATGTACATTTCACCTAATCTTGAAACTGAACATCTC CCTGAAGGTCTCACGCTTGCGTAG
AA sequence Show only first row Show all	>Potri.005G235200.1 pacid=42804249 polypeptide=Potri.005G235200.1.p locus=Potri.005G235200 ID=Potri.005G235200.1.v4.1 annot-version=v4.1 MNLFRSRVSSSIVSTMGEEQGSSASASTATSSSRAKTRSTWPSILRWIPTSTDHVIGAEKRLFSLVKTPYVVEQVNIGSGPPGSKTRWFRSKSDEPRFIN TVTFQSKEDSPTLVMVHGYGASQGFFFRNFDALASRFKIIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYAL KHPEHVKQLILVGSAGFSSESDSKSEWLAQFRATWKGAILNHLWESNFTPQKVVRGLGPWGPGLVRRYTTARFGAYSTGVVLAEEESKLLTDYVYHTLAA KASGELCLKFIFSFGAYARKPLLQSASEWKVPTTFIYGFEDWMSYEGAQQARQHMKVPCEIIRVPQGGHFVFIDNPTAFHSAVFYACRMYISPNLETEHL PEGLTLA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24160			alpha/beta-Hydrolases superfam...		Potri.005G235200 [exp]	0	1
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Potri.018G069200 [exp]	3.16	0.9606
AT5G05410	AP2_ERF	DREB2A	DEHYDRATION-RESPONSIVE ELEMENT...		Potri.010G183700 [exp]	3.46	0.9696	Pt-DREB2.2
AT2G29500			HSP20-like chaperones superfam...		Potri.009G147900 [exp]	4.69	0.9742
AT2G29500			HSP20-like chaperones superfam...		Potri.019G081250 [exp]	5.09	0.9731
AT1G12060		ATBAG5	BCL-2-associated athanogene 5 ...		Potri.003G167500 [exp]	9.38	0.9662
AT2G29500			HSP20-like chaperones superfam...		Potri.009G049800 [exp]	10.00	0.9661	Pt-HSP17.9
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Potri.001G303000 [exp]	10.58	0.9570
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.001G042600 [exp]	13.19	0.9651	HSP70.9
AT2G29500			HSP20-like chaperones superfam...		Potri.019G081200 [exp]	14.83	0.9603	Pt-HSP17.5
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Potri.012G043700 [exp]	16.61	0.9297

Compare expression of checked genes

Potri.005G235200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.