Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19900 693 / 0 glyoxal oxidase-related protein (.1) AT1G75620 678 / 0 glyoxal oxidase-related protein (.1) AT3G57620 573 / 0 glyoxal oxidase-related protein (.1) AT1G14430 564 / 0 glyoxal oxidase-related protein (.1) AT1G67290 439 / 3e-148 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT5G19580 434 / 2e-146 glyoxal oxidase-related protein (.1) AT3G53950 419 / 3e-141 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235500 [exp] 998 / 0 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 904 / 0 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 587 / 0 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 570 / 0 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 532 / 0 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 495 / 8e-171 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.006G160800 [exp] 452 / 3e-153 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 444 / 6e-150 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 425 / 7e-144 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024312 [exp] 650 / 0 AT1G75620 656 / 0.0 glyoxal oxidase-related protein (.1) Lus10015949 [exp] 568 / 0 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10030798 [exp] 533 / 0 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1) Lus10024342 [exp] 436 / 8e-148 AT3G53950 841 / 0.0 glyoxal oxidase-related protein (.1) Lus10011109 [exp] 431 / 1e-145 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10011111 [exp] 431 / 5e-145 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10043231 [exp] 427 / 5e-142 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10043230 [exp] 422 / 2e-140 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1) Lus10034959 [exp] 419 / 5e-140 AT1G67290 619 / 0.0 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10012979 [exp] 413 / 8e-136 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07250 [poplar] [flax] Glyoxal_oxid_N Glyoxal oxidase N-terminus CL0159 [poplar] [flax] E-set PF09118 [poplar] [flax] DUF1929 Domain of unknown function (DUF1929)
Representative CDS sequence Show only first row Show all	>Potri.005G235600.1 pacid=42804862 polypeptide=Potri.005G235600.1.p locus=Potri.005G235600 ID=Potri.005G235600.1.v4.1 annot-version=v4.1 ATGCATCGTTATACTTGGATACTCTTCTTTCTCTTCTTGCAACTGTTCTTTGCTGTCCAACCATGTCACCGGGTAGTGACCTCCGCAGCTGGTCGTGGCA GGTGGCAACTCTTGCAGAAAAACATTGGCATAGTAGCTATGCATATGCAACTCCTCAATAATGACCGTGTAGTAATCTATGATAGAACTGACTATGGCAA GTCGAATATTTCATTACCACATGGAAAATGTCGAAATGATTCATGGGAGTTGGTTATCAAATATGACTGCACCGCTCATTCTGTTGAGTATGATGTCTTG GCTAATAAATTCAGGCCACTTATGGTCCAAACTAATGTATGGTGTTCTTCAGGTGCTGTAGTCCCTGATGGGAGTCTGATTCAGACCGGTGGTTTCAATG ATGGTCAACGTAAGGTCAGGACTTTCTATCCATGCAATGGTGATTGTGATTGGGTGGAAACTGGTGATGGTCTTAAGGCAAGAAGATGGTATGCCACTAA TCATATACTGCCAGATGGGAAGCAAATCATTATTGGTGGTAGAAGGCAATTCAATTATGAATTTTATCCCAAAACTTCTTCCCCGGATGTCTACAGTTTG CCATTTCTATTGCAAACTAATGATCGTGGCAGTGAAAACAACTTATATCCATTTGTTTTTCTCAACAGTGATGGGAATTTATTCATTTTCGCCAATAATC GAGCCATATTGTTCGATTACAAGACGGGCAAGGTGGTGAAGACTTATCCAGCAATACCTGGAGGTGATCCAAGAAGCTATCCAAGTACAGGTTCTGCAGT GTTGCTTCCATTGAAGAACTTAGATGCTGCAACTATTGAAGCTGAGGTTTTGGTATGTGGAGGTGCACCAAAAGGGTCTTTTGAAATGGCGACAAAACGT AAATCGGCAGAACGTAAATTTCTCAAAGCTTTGGATACTTGTGGCCGGATCAAGATAAACGAACCAAGTCCTCAATGGGTAATGGAAACTATGCCCTGTG CTAGAGTAATGGGCGATATGACATTGCTTCCGAACGGCGTTGTCTTGATCATTAACGGAGCTGGAGATGGTACTGCCGGGTGGGAAAATGGGCGAAGTCC AGCCTTGAACCCCGTCCTCTATTGGCCCGACGGTGCAGCAGGTTCAAGGTTTGAGCCGCTAAATCCAAGTACCATCCCAAGAATGTACCATTCCGCAGCA ATTTTGCTTCGTGATGGCAGGGTTCTTGTTGGTGGAAGCAATCCCCATAGTGGATATGAATTCACTAGGGTCTTATTTCCAACTGAATTGAGTTTAGAAG CATTCTCTCCACCATATTTGGATTCAAAAAATAAGTACTTGAGACCAAAAATTGTCTCATCAACCGCTTCCAAAGGTAAATATATTGGTTACGGACAAAA ATTGTGGGTAAGGTTCAAGGTCATAGGAAAATTAAAAGCAGATATGGTGTCGGTGACAATGGTTGCACCAGCGTTCAACACACATTCCTTTTCTATGAAT CATAGGCTGCTGGCACTTAGGAACGAGAAGGTGACCTATGTGCGCACATCAATTTATGACATTCAAGTCACGACGCCCAGTTCCGGATACCTTGCACCCT CAGGTTATTACATCTTATACGTGGTTCATCAATATATTCCTAGCATAGGCATTTGGGTCAAATTATATATCTAA
AA sequence Show only first row Show all	>Potri.005G235600.1 pacid=42804862 polypeptide=Potri.005G235600.1.p locus=Potri.005G235600 ID=Potri.005G235600.1.v4.1 annot-version=v4.1 MHRYTWILFFLFLQLFFAVQPCHRVVTSAAGRGRWQLLQKNIGIVAMHMQLLNNDRVVIYDRTDYGKSNISLPHGKCRNDSWELVIKYDCTAHSVEYDVL ANKFRPLMVQTNVWCSSGAVVPDGSLIQTGGFNDGQRKVRTFYPCNGDCDWVETGDGLKARRWYATNHILPDGKQIIIGGRRQFNYEFYPKTSSPDVYSL PFLLQTNDRGSENNLYPFVFLNSDGNLFIFANNRAILFDYKTGKVVKTYPAIPGGDPRSYPSTGSAVLLPLKNLDAATIEAEVLVCGGAPKGSFEMATKR KSAERKFLKALDTCGRIKINEPSPQWVMETMPCARVMGDMTLLPNGVVLIINGAGDGTAGWENGRSPALNPVLYWPDGAAGSRFEPLNPSTIPRMYHSAA ILLRDGRVLVGGSNPHSGYEFTRVLFPTELSLEAFSPPYLDSKNKYLRPKIVSSTASKGKYIGYGQKLWVRFKVIGKLKADMVSVTMVAPAFNTHSFSMN HRLLALRNEKVTYVRTSIYDIQVTTPSSGYLAPSGYYILYVVHQYIPSIGIWVKLYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19900			glyoxal oxidase-related protei...		Potri.005G235600 [exp]	0	1
					Potri.005G237401 [exp]	3.00	0.7614
ATCG01250		ATCG01250.1, ND...	NADH-Ubiquinone/plastoquinone ...		Potri.008G207100 [exp]	10.67	0.7748
AT4G10270			Wound-responsive family protei...		Potri.013G147900 [exp]	18.16	0.7649
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.016G027900 [exp]	31.67	0.6994
ATCG00510		ATCG00510.1, PS...	photsystem I subunit I (.1)		Potri.016G094033 [exp]	38.79	0.7322
AT4G14819			Protein of unknown function (D...		Potri.010G086000 [exp]	41.18	0.7018
ATCG00350		ATCG00350.1, PS...	Photosystem I, PsaA/PsaB prote...		Potri.009G016401 [exp]	42.52	0.7239
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Potri.019G028400 [exp]	48.06	0.7156
ATCG00500		ATCG00500.1, AC...	acetyl-CoA carboxylase carboxy...		Potri.005G150200 [exp]	48.09	0.7233
					Potri.007G062162 [exp]	51.02	0.7100

Compare expression of checked genes

Potri.005G235600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.