Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19880 676 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 130 / 8e-33 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G11580 98 / 2e-21 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G47660 97 / 7e-21 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 97 / 9e-21 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G16040 95 / 9e-21 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 90 / 1e-19 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT4G14368 92 / 2e-19 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 92 / 3e-19 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 91 / 5e-19 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G026600 [exp] 842 / 0 AT1G19880 703 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.007G100200 [exp] 132 / 2e-33 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.002G025600 [exp] 115 / 4e-30 AT1G19880 43 / 2e-05 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 98 / 6e-22 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 94 / 2e-20 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.002G070300 [exp] 96 / 3e-20 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 95 / 3e-20 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.011G121900 [exp] 94 / 5e-20 AT3G15430 743 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.001G026900 [exp] 94 / 9e-20 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033168 [exp] 714 / 0 AT1G19880 724 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10039618 [exp] 129 / 2e-32 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 115 / 3e-27 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10033543 [exp] 105 / 2e-24 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10017581 [exp] 105 / 3e-24 AT3G02510 636 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10042800 [exp] 97 / 1e-20 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 96 / 3e-20 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036707 [exp] 92 / 1e-19 AT1G27060 375 / 1e-128 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10037219 [exp] 91 / 2e-19 AT1G27060 424 / 1e-147 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10027273 [exp] 91 / 5e-19 AT4G14368 1269 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.005G236000.1 pacid=42803422 polypeptide=Potri.005G236000.1.p locus=Potri.005G236000 ID=Potri.005G236000.1.v4.1 annot-version=v4.1 ATGTCGGCTGTTGAAGCGGAGAAGAAGGCTGCAGAGGAGACGAAGGTAGAAGAGAAAGGAGGGGAGCTGTTGTTCTGTGGCGCCACCTGTTGGAATGTTG TTGGTCGCAAGAAAGGTGCACAGGAAGGCAACTTGGTCTCCCCTAGTCGGCTACGTCCTCTTGTTGGTGTCGATATCCGCGTCGTTGCCTCAGGTTCCGC GTCGTGTCACTGTGTGGCATTGGATGTTGAGGGGCGTTGCTACACATGGGGACGCAATGAGAGGGGGCAACTAGGTCACGGAGACACGATTCAGCGCGAT AGACCAACAGTCGTTTCTGAACTTTCCAAGTATAAACTTATTAGAGCTGGAGCTGGTAGGAGCCATTCAGTAGTGGTTACTGAAGATGGTTTATCTCTTG CATTTGGCTGGAATAAACATGGGCAGCTGGGCTCTGGCTCAGCAAGAAATGAAATTGAGTCATCTCCTGTTCGCTGTCTTGTGTCTGATGTCAAAACTAC TGCTTGTGGCGCTGACTTCACAGTGTGGCTATCCTCTGTTGAAGGAGCTTCTATATTATCTGCAGGCCTTCCACAGTATGGTCAACTTGGACATGGAACG GACAAAGAGTACAATACAAAAGACAGCTCAGTCAGGCTGGCATATGAAGCCCAACCTCGCCCTAGAGCGATAGCTTCTCTTGCTGGGGAAACCATTGTGA AAGTTGCATGTGGAACAAATCATACAGTGGCTGTGGATTCAAATGGTTATGTTTACACGTGGGGCTTCGGAGGTTATGGAAGGCTTGGACATAGAGAGCA GAAGGATGAGTGGGTCCCTCGGCGCGTGGACATCTTCACAAAGCACAATGTTTTGCCTCCTGGTGCAGTTATTTCAGCTGGTTCTGTGAGTTCTGCTTGT ACTGCAGGAGGTGGACAGTTGTATATGTGGGGCAAAATAAAAAATACTGGTGATGACTGGATGTATCCTAAACCTCTCATGGATTTAAGTGGTTGGAATT TACGTTGCATGGATTCAGGAAACATGCATCATTTTGTTGGTGCTGATAACTCCTGCATAAGTTGGGGGTATGCTCTGAATGGAGAACTGGGATATGGCCC TAATGGTCAAAAGTCTTCGGCAGTGCCCAAGAAGGTAGATATTCTGGAGGGCATGCATGTTATTGGTGTTGCATGTGGCACGGGCCATTCCATGGTCATA GTTGACAGGACGAATGTTGGTGATGGACTTGATCAGCTTGATGTCTATGATGGCAAAGCTTCTGATGAAGGTAGTGGGGAGCCTGGGAGTAAAGACCATG TTAAGCAAAGTGGGAAAAAGGGAGCTGCTAAAGCTACTGATAAGTCCAGAAAGAGGAAGTCAAAGGATGCATCAGAATCTGAAGAAGAGAATAGCAATGA TGAAAGTGACGCCAGTGATGATCAAGTCAATGGCCAGACAGAAAAGAAGAGCATACGTGGTGGAAAGGTTTCTGGTACGGGTCAAAGTAGAGGTGGAAAA AAATCTTCATCCGCTGGAAAGAGTACTGGACGCGGGCAGGGCCGCCCTCCATCGGCAAATAAAAGCACAAATTCTTCTCTAGAAAAAACTGGTAAGAGAG GAAGGCCACGCAAGTCATAA
AA sequence Show only first row Show all	>Potri.005G236000.1 pacid=42803422 polypeptide=Potri.005G236000.1.p locus=Potri.005G236000 ID=Potri.005G236000.1.v4.1 annot-version=v4.1 MSAVEAEKKAAEETKVEEKGGELLFCGATCWNVVGRKKGAQEGNLVSPSRLRPLVGVDIRVVASGSASCHCVALDVEGRCYTWGRNERGQLGHGDTIQRD RPTVVSELSKYKLIRAGAGRSHSVVVTEDGLSLAFGWNKHGQLGSGSARNEIESSPVRCLVSDVKTTACGADFTVWLSSVEGASILSAGLPQYGQLGHGT DKEYNTKDSSVRLAYEAQPRPRAIASLAGETIVKVACGTNHTVAVDSNGYVYTWGFGGYGRLGHREQKDEWVPRRVDIFTKHNVLPPGAVISAGSVSSAC TAGGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADNSCISWGYALNGELGYGPNGQKSSAVPKKVDILEGMHVIGVACGTGHSMVI VDRTNVGDGLDQLDVYDGKASDEGSGEPGSKDHVKQSGKKGAAKATDKSRKRKSKDASESEEENSNDESDASDDQVNGQTEKKSIRGGKVSGTGQSRGGK KSSSAGKSTGRGQGRPPSANKSTNSSLEKTGKRGRPRKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19880			Regulator of chromosome conden...		Potri.005G236000 [exp]	0	1
AT1G17620			Late embryogenesis abundant (L...		Potri.001G200700 [exp]	3.87	0.9076
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.014G110500 [exp]	13.45	0.7907	Pt-POL.1
AT2G30210		LAC3	laccase 3 (.1)		Potri.019G124300 [exp]	16.43	0.8854
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.002G003800 [exp]	20.00	0.8823
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.019G015768 [exp]	21.63	0.8445
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.011G006050 [exp]	22.44	0.8623
AT3G04860			Plant protein of unknown funct...		Potri.005G050000 [exp]	22.62	0.8068
AT1G14900		HMGA	high mobility group A (.1)		Potri.008G132400 [exp]	22.69	0.8143	HMGA903
					Potri.004G179866 [exp]	23.23	0.8691
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.001G395700 [exp]	23.66	0.8277

Compare expression of checked genes

Potri.005G236000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.