Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19870 321 / 2e-97 IQD32 IQ-domain 32 (.1) AT1G74690 119 / 1e-27 IQD31 IQ-domain 31 (.1) AT1G18840 105 / 2e-23 IQD30 IQ-domain 30 (.1.2) AT1G14380 91 / 1e-18 IQD28 IQ-domain 28 (.1.2.3) AT5G03040 86 / 2e-17 IQD2 IQ-domain 2 (.1.2.3) AT2G02790 84 / 2e-16 IQD29 IQ-domain 29 (.1) AT3G52290 83 / 2e-16 IQD3 IQ-domain 3 (.1) AT4G14750 79 / 3e-15 IQD19 IQ-domain 19 (.1) AT3G22190 77 / 2e-14 IQD5 IQ-domain 5 (.1.2) AT4G00820 73 / 5e-13 IQD17 IQ-domain 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G025200 [exp] 1191 / 0 AT1G19870 315 / 5e-95 IQ-domain 32 (.1) Potri.012G069900 [exp] 113 / 6e-26 AT1G74690 387 / 8e-128 IQ-domain 31 (.1) Potri.017G079600 [exp] 108 / 2e-24 AT1G74690 225 / 2e-66 IQ-domain 31 (.1) Potri.015G063600 [exp] 105 / 2e-23 AT1G74690 407 / 2e-135 IQ-domain 31 (.1) Potri.016G086300 [exp] 86 / 3e-17 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 84 / 8e-17 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.008G156700 [exp] 81 / 7e-16 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.010G082600 [exp] 80 / 1e-15 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.006G226600 [exp] 76 / 3e-14 AT2G26180 386 / 1e-131 IQ-domain 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033167 [exp] 249 / 2e-70 AT1G19870 211 / 4e-57 IQ-domain 32 (.1) Lus10042173 [exp] 105 / 4e-23 AT1G74690 400 / 3e-132 IQ-domain 31 (.1) Lus10004263 [exp] 100 / 2e-21 AT1G74690 407 / 6e-135 IQ-domain 31 (.1) Lus10019916 [exp] 92 / 3e-19 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 84 / 1e-16 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10030784 [exp] 82 / 5e-16 AT2G02790 214 / 3e-61 IQ-domain 29 (.1) Lus10041419 [exp] 81 / 1e-15 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 81 / 1e-15 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10036508 [exp] 79 / 4e-15 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10013261 [exp] 77 / 2e-14 AT1G14380 212 / 7e-61 IQ-domain 28 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.005G236200.4 pacid=42804508 polypeptide=Potri.005G236200.4.p locus=Potri.005G236200 ID=Potri.005G236200.4.v4.1 annot-version=v4.1 ATGGGAAGATCCACTTCCTGTTTCAAAATAATCACCTGCGGCAGCGATTCTGCTGGGAGAGATGATCTTCAACTCCCTGAGAGCAAGGGTTCAAGTGACA AGCGTGGATGGAGTTTCCGGAAGAAATCTGCCCGTCATCGAGTTCTCAGCAACACTATCATTTCAGAAACCACCCCTTCTTCGGTGGATAAGGAGAGTCC AGAATCCACAAATCTAAACTTCCAACAACCAGGTATTCCTCCTGCTCCAGAGAAAATTGCTGTGATACAATGCACTGATGAGAAACCACAGCTGTCTGAG AAACCACAGCTGTCAGAGAAGTCACAGTTATCTACTTCAACAGAACAGGAATTACCAGAGACCATTGTTGTAACCAAGGATGAAAATGAAGTTGATGACC ATGTGGATGAGTCTGTTGTTATTGTCATACAGGCTGCTGTCAGGGGTTTTTTGGCTCAAAAAGAACTCCTCAAGCTTAAATATATTGTTAAGTTGCAAGC GGCTGTACGCGGTCACCTTGTCAGGCAGCATGCCATTGGAACCCTACGTTGTGTTCAGGCCATTGTTAAAATGCAAGCTCTTGTCCGTGCTCGTTGTGCT CGTTTGTGGGAAGAGCAGGTTGGTGGGAAGCATGGCAATCCTATATCCAAGACCTTGCAGAAGGAAAGCTCGGTAATCAAACCAACCACAACATACATTT CCATTGAGAAGCTGCTTAGAAATAGTTTCGCTCATCAGCTGATGGAGTCAACACCAAAGAGGAAGCCTATCCACATCAAGTGTGATTCTTCTAAACCTAA CTCTGGTTGGGAATGGTTGGAGAGGTGGATGTCTGTTTCATCAGCAGAACCAACACCCAGACCAGATTTAATAACTGAACAACTAGAAATAGAGAAGAGT GAGAATGTTACCTCTCCAATGCAAACTAGAGCCCCACCTGAAGGATTCTGCGAGTTGGGAGATTCAAAATCTAATATGGAGGAAATTGTTTTGCCATCTG AAAGTGAAGAGAACATGATAAAATCTGATGTGTCTGACTTCAAGTTTCAGGTGTGCCATCCAAACTCCCCTTTAGCAGGAGATATTTTGGAGCAGCCTCA ACCTGAGATGATCGGTAAATCTGACGCAGAAGAAACCTCAATAACTATAAATTCGCTTCCGAATCAAACTGTTGAATCTGAAGTGAATTATAAAACAGTG ACTGATTCTCTTCCTTGTAAGCAAGAATTAGAAGGTGAACAACCTGATCAACCCAAACGATCTATGAAAAGGGAAGCGGCTGAACAATTGGATACTGAAG AAAAGGAGTTTGTGTATGGATCAATGAAGGCAAGCAATCCTGCTTTCATTGCTTCCCAGACAAAATTTGAGGGGCTGGGTTCAACAGCCAGTTTGAATAG ATCATCTAGTTCTTCGCATGAAGATAGTGGAATTGAATCAAACACAGACATATCTGGGATAGATACTGAATCAAGGACAAAGGAGCTTGACATGACAGAA AACTCAGTCTCCCACATTTCAAGGGTGCAATATGGTGGCTCTGAATGTGGTACTGAACTTTCTGTTACTTCCACTCTTGATTCACCTGATGCATTTGAAG TTGGAGCTGCAGAACTCGAGCATGAAGCCAAAGTTTCAGAGGAAGAAACTTGTAATCCTAACAGAGCAAAAGACCAGGACATCAAAGACAAGGATTCATC CAAGGATCCAGTTTCTAATTTGTCTCACATGAATCAGCCTGAGAAACTTGAGGTCGTCAAAGGTGAATCAGCAAATACAATTGTTGTTGCTGATTCCACA CAGGAGGAGATGAATCCAGAGAGAAGTGTATCCGATGTCCAGAGAGAGCTGAACTCTGAGACTGGTGGTCTAGCATATAGATCATCCCCAGAAGCTTCTC CCAGAAGTCTTTTAACTGTTCCAGACTCCCAAGGAACACCTTCAAGTCAGTTATCTGTGAAAGCTAAAAAGAGCAGAGCTGACAGAAGCAGTTCTAGCCA AAAACATAAGTCTTCATCAGCAAGTAAGAGATCTCCATCGAACCCAAATCATGATTCTGCTGCGAGAAGTAGTGTGGAACAATTGTCCAAAGATCAAAAG AATGGGAAGAGGCACAACTCATTTGGTTCTCCAAAACCTGACAGCACTGATCAAGAGCCAAGAGATAGCAGCAGCAGCAGTCCTTCTCTCCCTCGTTTCA TGAAAGCCACAGAATCAGCAAGAGCCAAAGTGAATGCAATTAGCTCACCAAGATCCAGCCCAGATGTGCAGGACAGAGATTTCATCAAGAAGAGGCAGTC CTTACCTGGTGCAAATGGAAGGCATGGTTCTCCACGCATCCAGCGGTCAACGTCTCAAGCACAGCACGGTGCAAAGGGAAATGGTAGCCACGTTGTTCAT GAGAAAAAGTGGCAGAGGTGA
AA sequence Show only first row Show all	>Potri.005G236200.4 pacid=42804508 polypeptide=Potri.005G236200.4.p locus=Potri.005G236200 ID=Potri.005G236200.4.v4.1 annot-version=v4.1 MGRSTSCFKIITCGSDSAGRDDLQLPESKGSSDKRGWSFRKKSARHRVLSNTIISETTPSSVDKESPESTNLNFQQPGIPPAPEKIAVIQCTDEKPQLSE KPQLSEKSQLSTSTEQELPETIVVTKDENEVDDHVDESVVIVIQAAVRGFLAQKELLKLKYIVKLQAAVRGHLVRQHAIGTLRCVQAIVKMQALVRARCA RLWEEQVGGKHGNPISKTLQKESSVIKPTTTYISIEKLLRNSFAHQLMESTPKRKPIHIKCDSSKPNSGWEWLERWMSVSSAEPTPRPDLITEQLEIEKS ENVTSPMQTRAPPEGFCELGDSKSNMEEIVLPSESEENMIKSDVSDFKFQVCHPNSPLAGDILEQPQPEMIGKSDAEETSITINSLPNQTVESEVNYKTV TDSLPCKQELEGEQPDQPKRSMKREAAEQLDTEEKEFVYGSMKASNPAFIASQTKFEGLGSTASLNRSSSSSHEDSGIESNTDISGIDTESRTKELDMTE NSVSHISRVQYGGSECGTELSVTSTLDSPDAFEVGAAELEHEAKVSEEETCNPNRAKDQDIKDKDSSKDPVSNLSHMNQPEKLEVVKGESANTIVVADST QEEMNPERSVSDVQRELNSETGGLAYRSSPEASPRSLLTVPDSQGTPSSQLSVKAKKSRADRSSSSQKHKSSSASKRSPSNPNHDSAARSSVEQLSKDQK NGKRHNSFGSPKPDSTDQEPRDSSSSSPSLPRFMKATESARAKVNAISSPRSSPDVQDRDFIKKRQSLPGANGRHGSPRIQRSTSQAQHGAKGNGSHVVH EKKWQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.005G236200 [exp]	0	1
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.016G085900 [exp]	1.73	0.9326
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.007G047000 [exp]	1.73	0.9442
AT3G15050		IQD10	IQ-domain 10 (.1)		Potri.011G096500 [exp]	2.82	0.9370
AT1G33800			Protein of unknown function (D...		Potri.013G102200 [exp]	3.46	0.9282
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.009G075300 [exp]	5.29	0.9193
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Potri.002G113400 [exp]	7.41	0.8927
AT2G20650			RING/U-box superfamily protein...		Potri.017G012600 [exp]	7.93	0.9253
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Potri.018G018600 [exp]	8.71	0.9029
AT3G59690		IQD13	IQ-domain 13 (.1)		Potri.013G127200 [exp]	9.48	0.9083
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.005G141500 [exp]	9.53	0.9258

Compare expression of checked genes

Potri.005G236200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.