Plant FIBer expression Database

Potri.005G236300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19860 318 / 2e-105 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
AT5G66270 130 / 3e-33 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
AT3G51180 125 / 3e-31 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G025100
[exp]
719 / 0 AT1G19860 319 / 8e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Potri.005G116001
[exp]
171 / 2e-50 AT1G19860 122 / 3e-32 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Potri.007G013600
[exp]
172 / 5e-48 AT1G19860 109 / 1e-25 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Potri.005G115901
[exp]
100 / 1e-24 AT5G66270 75 / 5e-16 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Potri.002G209216
[exp]
59 / 4e-09 AT4G02560 364 / 4e-109 luminidependens, Homeodomain-like superfamily protein (.1.2)
Potri.014G132800
[exp]
59 / 4e-09 AT4G02560 349 / 8e-104 luminidependens, Homeodomain-like superfamily protein (.1.2)
Potri.001G088050
[exp]
42 / 2e-05 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024316
[exp]
370 / 1e-125 AT1G19860 261 / 1e-83 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Lus10012404
[exp]
354 / 3e-119 AT1G19860 256 / 1e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Lus10040921
[exp]
57 / 3e-08 AT4G02560 677 / 0.0 luminidependens, Homeodomain-like superfamily protein (.1.2)
Lus10009816
[exp]
54 / 1e-07 AT4G02560 559 / 0.0 luminidependens, Homeodomain-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.005G236300.1 pacid=42803281 polypeptide=Potri.005G236300.1.p locus=Potri.005G236300 ID=Potri.005G236300.1.v4.1 annot-version=v4.1
ATGCGAGGGTTGAGGAAATCAAAAAGAGTTTGTTGGGCATCAGATGTTAATCTTTGTCAGGTAAGGTTGTTCCTGTCAGAGGAATCTCCTTCACTAGTTG
GGTCGGGTGCTCAAGATCACCTCCAAGCAAAGTCGTCATGGCCATCTCATTCAGCTGGAACCGATGACTTTCAGCCCCCTGGCTTTGAAGGAGGCCATCC
TGCTAGTCAATTGCAGATTAAGGTGTCAGAAATCCCTGTGATAAAATGGAGATGTCCGCCCAGGCTTGTCTTGAACTTGACTTGGCAAGTGGTTTCTGGG
GAGGAAAGTAAAGATATGGAGTTTCAAAATCAGAGAGAGATTAGGGTGCTTGAAGCAGTTTATCCTCGACCATCTGCCATTCCTCCAAACCCTGCTTTTT
CTGTGGACCTGGAAAGCTCTCAGCATAATGATCATCAAATTCCTTTGATTCCTATTACCCCCATTGAAGATGAAGATGCAGCAGAGGAACCATCTGATGT
AATGGGACCATCAATGGGTCCAATGAGTTCACAAGCCCAACTATTAGCTTCCGGAGTTCCATCTTCTCAAAGCAGCATTCCCAGCATTCCAAATGAGAAA
CCGACTGCTGGATTGCTCCCTGGTGTTGAACCTGGTGCAGTGGCTGCTGCATCTGCTGCCTTTGCTGCTGTCAAAAGCAACGAACAGGGAAGTTTGATAG
ACCATGACCTGCTCATTAAAATTCTCAGCAACCCGAAATTGGTTGAGAAGTTGGTTACTGATTATGGAGCTGTGGCCAACGCACAGAATATTCCCAAGCC
CCCTTTGTCAGATCCTCAACCTCCTCATCTAACTTTGCCCAATCCTGCTCATATTCAAATGAAGAGAGCAGAATCCATTACACAAGCATCATTAACTGCG
ACTCCAAGTGGATCATTCTACACGCAGCCAAATGGAACAGGAATGGGGGTTCTTCCTAGTGCACGGGTTCTTCCACCAGGAGTTCCATCCTCACCTTCTA
TTGGAGCGACACAAACAAAGGACATGAGCTATTATAAGAACTTGATTCAGCAGCATGGAGGTGATAGACAAGAAACACCTCAGCAGTTTGGTGGCCGTTA
CAATCACCAAATAGGTACAAGCCAAGATTTAGTTAATTCCAAGTCGAGGGAATCAAAACACAAGATCATGAAGCCTTGTATTTACTTCAATACTCCAAGA
GGATGCCGGAATGGAGCCAATTGTGCATACCAACATGATTCATCGTCCCAGAAAAAAGGCAGTAGCATAGCAGAGGTGCAGAGCGCAAAGAGAATGAAAA
TGGATAGGGAGATCAGTAGCTAG
AA sequence
>Potri.005G236300.1 pacid=42803281 polypeptide=Potri.005G236300.1.p locus=Potri.005G236300 ID=Potri.005G236300.1.v4.1 annot-version=v4.1
MRGLRKSKRVCWASDVNLCQVRLFLSEESPSLVGSGAQDHLQAKSSWPSHSAGTDDFQPPGFEGGHPASQLQIKVSEIPVIKWRCPPRLVLNLTWQVVSG
EESKDMEFQNQREIRVLEAVYPRPSAIPPNPAFSVDLESSQHNDHQIPLIPITPIEDEDAAEEPSDVMGPSMGPMSSQAQLLASGVPSSQSSIPSIPNEK
PTAGLLPGVEPGAVAAASAAFAAVKSNEQGSLIDHDLLIKILSNPKLVEKLVTDYGAVANAQNIPKPPLSDPQPPHLTLPNPAHIQMKRAESITQASLTA
TPSGSFYTQPNGTGMGVLPSARVLPPGVPSSPSIGATQTKDMSYYKNLIQQHGGDRQETPQQFGGRYNHQIGTSQDLVNSKSRESKHKIMKPCIYFNTPR
GCRNGANCAYQHDSSSQKKGSSIAEVQSAKRMKMDREISS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G19860 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.005G236300
[exp]
0 1
AT3G58630 Trihelix sequence-specific DNA binding ... Potri.003G118600
[exp]
3.87 0.6754
AT4G10090 ELP6 elongator protein 6 (.1) Potri.008G046400
[exp]
4.00 0.7047
AT5G02050 Mitochondrial glycoprotein fam... Potri.004G049600
[exp]
13.41 0.6595 Pt-SDH4.4
AT2G33835 C3HZnF FES1 FRIGIDA-ESSENTIAL 1, Zinc fing... Potri.011G056600
[exp]
17.77 0.6783
Potri.006G183101
[exp]
18.81 0.6829
AT1G78100 AUF1 auxin up-regulated f-box prote... Potri.002G094600
[exp]
27.87 0.6712
AT1G26810 GALT1 galactosyltransferase1 (.1) Potri.010G168500
[exp]
31.84 0.5958
AT5G55500 ATXYLT "beta-1,2-xylosyltransferase",... Potri.001G360600
[exp]
42.33 0.5798
AT5G35430 Tetratricopeptide repeat (TPR)... Potri.006G065600
[exp]
43.68 0.5708
AT4G32760 ENTH/VHS/GAT family protein (.... Potri.006G241000
[exp]
60.66 0.5953

Potri.005G236300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.